Literature DB >> 28133765

Boundaries of loop domains (insulators): Determinants of chromosome form and function in multicellular eukaryotes.

Darya Chetverina1, Miki Fujioka2, Maksim Erokhin1, Pavel Georgiev1, James B Jaynes2, Paul Schedl3,4.   

Abstract

Chromosomes in multicellular animals are subdivided into a series of looped domains. In addition to being the underlying principle for organizing the chromatin fiber, looping is critical for processes ranging from gene regulation to recombination and repair. The subdivision of chromosomes into looped domains depends upon a special class of architectural elements called boundaries or insulators. These elements are distributed throughout the genome and are ubiquitous building blocks of chromosomes. In this review, we focus on features of boundaries that are critical in determining the topology of the looped domains and their genetic properties. We highlight the properties of fly boundaries that are likely to have an important bearing on the organization of looped domains in vertebrates, and discuss the functional consequences of the observed similarities and differences.
© 2017 WILEY Periodicals, Inc.

Entities:  

Keywords:  TADs; chromosome architecture; gene regulation; insulators; loop topology; looped domain

Mesh:

Substances:

Year:  2017        PMID: 28133765      PMCID: PMC5536339          DOI: 10.1002/bies.201600233

Source DB:  PubMed          Journal:  Bioessays        ISSN: 0265-9247            Impact factor:   4.345


  100 in total

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Authors:  James A Kennison; Jeffrey W Southworth
Journal:  Adv Genet       Date:  2002       Impact factor: 1.944

2.  Looping and interaction between hypersensitive sites in the active beta-globin locus.

Authors:  Bas Tolhuis; Robert Jan Palstra; Erik Splinter; Frank Grosveld; Wouter de Laat
Journal:  Mol Cell       Date:  2002-12       Impact factor: 17.970

3.  The suppressor of Hairy-wing binding region is required for gypsy mutagenesis.

Authors:  P A Smith; V G Corces
Journal:  Mol Gen Genet       Date:  1992-05

Review 4.  Long-Range Chromatin Interactions.

Authors:  Job Dekker; Tom Misteli
Journal:  Cold Spring Harb Perspect Biol       Date:  2015-10-01       Impact factor: 10.005

5.  A position-effect assay for boundaries of higher order chromosomal domains.

Authors:  R Kellum; P Schedl
Journal:  Cell       Date:  1991-03-08       Impact factor: 41.582

6.  The mcp element from the Drosophila melanogaster bithorax complex mediates long-distance regulatory interactions.

Authors:  M Muller; K Hagstrom; H Gyurkovics; V Pirrotta; P Schedl
Journal:  Genetics       Date:  1999-11       Impact factor: 4.562

7.  Loss of insulator activity by paired Su(Hw) chromatin insulators.

Authors:  E Muravyova; A Golovnin; E Gracheva; A Parshikov; T Belenkaya; V Pirrotta; P Georgiev
Journal:  Science       Date:  2001-01-19       Impact factor: 47.728

8.  A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping.

Authors:  Suhas S P Rao; Miriam H Huntley; Neva C Durand; Elena K Stamenova; Ivan D Bochkov; James T Robinson; Adrian L Sanborn; Ido Machol; Arina D Omer; Eric S Lander; Erez Lieberman Aiden
Journal:  Cell       Date:  2014-12-11       Impact factor: 41.582

Review 9.  TFIIIC bound DNA elements in nuclear organization and insulation.

Authors:  Jacob G Kirkland; Jesse R Raab; Rohinton T Kamakaka
Journal:  Biochim Biophys Acta       Date:  2012-09-21

10.  Elba, a novel developmentally regulated chromatin boundary factor is a hetero-tripartite DNA binding complex.

Authors:  Tsutomu Aoki; Ali Sarkeshik; John Yates; Paul Schedl
Journal:  Elife       Date:  2012-12-13       Impact factor: 8.140

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  21 in total

1.  Distinct Elements Confer the Blocking and Bypass Functions of the Bithorax Fab-8 Boundary.

Authors:  Olga Kyrchanova; Daniel Wolle; Marat Sabirov; Amina Kurbidaeva; Tsutomu Aoki; Oksana Maksimenko; Maria Kyrchanova; Pavel Georgiev; Paul Schedl
Journal:  Genetics       Date:  2019-09-24       Impact factor: 4.562

2.  The Role of Insulators in Transgene Transvection in Drosophila.

Authors:  Pawel Piwko; Ilektra Vitsaki; Ioannis Livadaras; Christos Delidakis
Journal:  Genetics       Date:  2019-04-04       Impact factor: 4.562

3.  Complete reconstitution of bypass and blocking functions in a minimal artificial Fab-7 insulator from Drosophila bithorax complex.

Authors:  Olga Kyrchanova; Marat Sabirov; Vladic Mogila; Amina Kurbidaeva; Nikolay Postika; Oksana Maksimenko; Paul Schedl; Pavel Georgiev
Journal:  Proc Natl Acad Sci U S A       Date:  2019-06-17       Impact factor: 11.205

4.  Interactions between BTB domain of CP190 and two adjacent regions in Su(Hw) are required for the insulator complex formation.

Authors:  Larisa Melnikova; Margarita Kostyuchenko; Varvara Molodina; Alexander Parshikov; Pavel Georgiev; Anton Golovnin
Journal:  Chromosoma       Date:  2017-09-22       Impact factor: 4.316

5.  Activation of Su(Hw)-Controlled Genes Is Associated with Increase in GAF Binding.

Authors:  P V Elizar'ev; D A Chetverina; L S Melnikova; A Srivastava; R K Mishra; A K Golovnin; P G Georgiev; M M Erokhin
Journal:  Dokl Biochem Biophys       Date:  2019-11-25       Impact factor: 0.788

6.  NURF301 contributes to gypsy chromatin insulator-mediated nuclear organization.

Authors:  Shue Chen; Leah F Rosin; Gianluca Pegoraro; Nellie Moshkovich; Patrick J Murphy; Guoyun Yu; Elissa P Lei
Journal:  Nucleic Acids Res       Date:  2022-08-12       Impact factor: 19.160

7.  Comparative interactome analysis of the PRE DNA-binding factors: purification of the Combgap-, Zeste-, Psq-, and Adf1-associated proteins.

Authors:  Darya Chetverina; Nadezhda E Vorobyeva; Marina Yu Mazina; Lika V Fab; Dmitry Lomaev; Alexandra Golovnina; Vladic Mogila; Pavel Georgiev; Rustam H Ziganshin; Maksim Erokhin
Journal:  Cell Mol Life Sci       Date:  2022-06-09       Impact factor: 9.207

8.  Promoter-Proximal Chromatin Domain Insulator Protein BEAF Mediates Local and Long-Range Communication with a Transcription Factor and Directly Activates a Housekeeping Promoter in Drosophila.

Authors:  Yuankai Dong; S V Satya Prakash Avva; Mukesh Maharjan; Janice Jacobi; Craig M Hart
Journal:  Genetics       Date:  2020-03-16       Impact factor: 4.562

9.  Transvection.

Authors:  Takashi Fukaya; Michael Levine
Journal:  Curr Biol       Date:  2017-10-09       Impact factor: 10.834

10.  Boundaries potentiate polycomb response element-mediated silencing.

Authors:  Maksim Erokhin; Fedor Gorbenko; Dmitry Lomaev; Marina Yu Mazina; Anna Mikhailova; Azat K Garaev; Aleksander Parshikov; Nadezhda E Vorobyeva; Pavel Georgiev; Paul Schedl; Darya Chetverina
Journal:  BMC Biol       Date:  2021-06-02       Impact factor: 7.431

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