VacA and CagA Status as Biomarker of Two Opposite End Outcomes of Helicobacter pylori Infection (Gastric Cancer and Duodenal Ulcer) in a Moroccan Population.

Helicobacter pylori (H. pylori) infection induces inflammation of the gastric mucosa, which may progress to precancerous lesions leading to gastric cancer. Pathological determinism is associated to some virulence genes of the bacterium, notably the vacA and cagA genes. The present study aimed to determine the H. pylori genotypes distribution and their association with sex, age and gastric diseases in a Moroccan population. Gastric biopsy was taken from 1079 consenting patients. The specimens were processed by PCR to identify H. pylori and to determine the genotypic profile by PCR characterizing vacA s, vacA m and vacA i regions directly from biopsies H. pylori positives. VacA genotyping revealed the predominance of vacA m2 (53.2%), vacA s2 (52.9%) and vacA i2 (52%). The most virulent vacA alleles (s1, i1 and m1) are more predominant in men (47.3%, 41.9% and 46.1% respectively) than in women (38.3%, 33.3% and 37% respectively). However, the association between vacA genotypes and age did not reach a statistical significant value. Logistic regression analysis results show that vacA i1m1 and vacA i1m2 genotypes were strongly associated with the risk of GC, the Odds Ratio (95% confidence interval) was 29.73 [5.08-173.73] and 9.17 [2.06-40.82] respectively, while vacAs1/cagA+ seems to be a risk factor for DU since it is inversely associated with GC (OR was 0.13 [0.02-0.75]. The results of this study suggest that vacA i1 genotype independently to vacAm status may be of a clinical usefulness and will help to identify patients at a high risk of GC development.

Introduction

Gastric cancer is the third common cause of cancer mortality in the world. Multiple epidemiological studies have documented an increased incidence of gastric cancer with increased prevalence of H. pylori infection. In Morocco, as in other African and South East Asian countries, there is a paradox between the high prevalence of H. pylori infection (59.7%) [1], and low incidence of gastric cancer (5.6%) [2]. The difference of the geographic distribution of H. pylori infection and gastric cancer incidence suggests the presence of the determining factors which could influence the interaction between pathogen and host. Those factors include: human genetic polymorphism, environmental influences and the high genomic diversity of H. pylori. Overall, the genetic diversity of the bacteria occurs mainly in the virulence factors such as the cytotoxin-associated gene (cagA) and the vacuolating cytotoxin (vacA). CagA protein is a 120- to 140-kDa protein that is translocated into host cells by the type IV cag secretion system after bacterial attachment, altering thereafter the cell-signaling mechanisms in gastric cells. VacA protein is a cytotoxin inducing vacuolation of the epithelial cell; the gene is present in all strains but only some of them have a vacuolating activity. This variation is attributed to variations in vacA gene structures within the three regions: the signal sequence region (s-region) (s1 or s2), mid-region (m-region) (m1 or m2) and the intermediate-region (i-region) (i1, i2 or i3) [3-5]. The polymorphism of these two virulent factors has been the subject of numerous investigations [6-9].

In Morocco, we previously studied the status of cagA and the genotypes of vacA-s, -m regions. The preliminary results show the predominance of vacA s2m2 which was significantly associated with gastritis while the vacA s1m1 was significantly associated with peptic ulcer diseases[10]. Although, there was no significant difference in the prevalence of these two genotypes in gastric cancer [10]. When the H. pylori genotypes were correlated to histological lesions, significant associations between gastric cancer, cagA+ and vacA m1 genotypes were obtained in older patients [1]. Indeed, these preliminary results need to be confirmed in larger sampling to better characterize isolates that may lead to severe diseases and by exploring another vacA intermediate region (vacA i) described as strong marker of H. pylori associated disease among the vacA alleles [5]. To the best of our knowledge, this is the first study reported in Morocco and in the North Africa that aimed to evaluate the genetic polymorphism among H. pylori strains isolated from Moroccan patients on the basis of their vacA genotypes (s, m, and i) and cagA status. It aimed also to find the association of the vacA genotypes with sex, age and gastric diseases.

Materials and Methods

Patients and sampling

This study was conducted between May 2009 and January 2015. The biopsies of 801 patients, previously characterized on the basis of vacA-s, -m regions and cagA status were used to determine vacA i genotype and 278 patients were prospectively recruited and added to the existing cases to be analyzed.The total of consenting patients aged 15 years or more, who were attending the gastroenterology department of Hospital University (CHU) Hassan II of Fez, Morocco, and who had undergone endoscopy for the diagnosis of abdominal pain or discomfort were included in this study. However, patients aged less than 15 years or who were on medications (antibiotics, proton pump inhibitors) for the last 3 months and also pregnant or nursing women were excluded. The recruited patients have an average age of 49.30 ± 16.29 years, ranging from 15 to 99 years, and had a personal interview, where they were asked about individual characteristics. A total of three biopsies were collected from each patient during the endoscopy: one biopsy from the antrum which was directly used for molecular detection of H. pylori, cagA status and vacA genotyping by polymerase chain reaction (PCR). The other biopsies (one from antrum and the other from corpus) were examined independently by an experimented anatomopathologists.

All participants were informed about the study objectives, methods, confidentiality, and potential outcomes and they provided written informed consent for their participation. Also, parental consent was obtained on the behalf of the participants under the age of 18. In the case of illiterate or semi-literate patients, the written consent was read to them by the interviewer.This study was approved by the Institutional Review Board of the Hassan II University Hospital of Fez, Morocco.

DNA extraction

Using the protocol previously described (10), DNA was extracted from the gastric antrum biopsy specimens and stored at -20°C until molecular analysis.

Polymerase chain reaction (PCR)

H. pylori was detected in biopsies by PCR using glmM primers as described previously [11]. Positive Samples were subjected to multiplex PCR in order to determine the cagA status, vacA s and vacA m subtypes [12,13] and also to simple PCR to determine the vacA i polymorphisms using specific primers as previously described [5].

Samples with non identified genotypes (vacA s and m alleles) in multiplex PCR were subjected to PCR reactions using the same primer sets but in single reactions. Likewise, all non amplified vacA i cases were subjected to another PCR using the sense primer performed by Ferreira [14] and two antisense primers designed by Rhead [5].

The cagA status has been verified using two primer sets as previously described [6] in order to increase the sensitivity of detection. In fact, cagA was considered positive if it shows positive results with one of the three primers pairs.

Negative and positive controls were used for each reaction.

Statistical analysis

The statistical analysis was done using SPSS (Statistical product and services solutions, version 20, SPSS Inc. Chicago, Illinois, USA) software. It consisted primarily to describe the study population, for this, the results were presented as mean ± standard deviation for quantitative variables and number (percentage) for qualitative variables. Then, an univariate analysis was performed to establish all associations between clinical diseases, age, gender, H. pylori infection, and H. pylori genotypes (Only samples with single-strain infection (identified on the basis of vacuolating cytotoxin gene (vacA alleles) and complete vacA alleles were considered), Chi-square or Fisher’s exact tests were applied to establish all statistically significant associations; A p value < 0.05 was considered as significant. The multivariate analysis was performed to highlight the most incriminated factors in the occurrence of GC using simple logistic regression analysis. All variables with p ≤ 0.20 were included in the initial model. The final model was obtained using a stepwise elimination method to identify potential independent factor(s) associated with GC. The results were expressed as odds ratio (OR), 95% confidence intervals (CIs) and p-values.

Results

A total of 1079 patients from urban and rural areas of north center of Morocco and consulting for abdominal pain or discomfort were included in this study. They were 519 women (48.1%) and 560 men (51.9%). The clinical exam shows that 738 patients were with chronic gastritis, 260 with peptic ulcer disease (PUD), 119 with gastric ulcer [GU], 133 duodenal ulcers [DU], 8 with GU and DU and 81 patients were with gastric cancer (GC) [adenocarcinoma or gastric lymphoma]. All GC cases were confirmed by histological exam.

PCR results show that H. pylori infection rate in the studied population is 59.4% (641/1079). VacA and cagA genes were amplified in 99.53% (638/641) and 61.2% (392/641) cases respectively. The vacA s-, i- and m- regions were amplified in 99.06% (635/641), 90.01% (577/641) and 95% (609/641) of the cases respectively. The determined rate of vacA m2, s2 and i2 alleles was 53.2% (324/609), 52.9% (336/635) and 52% (300/577) respectively “Table 1”.

Table 1

Correlation between vacA mosaicism and cagA status of H.pylori strains and their distribution according to the gender and to the age.

	Gender N (%)			Age N (%)			cagA N (%)			Total N (%)
genotypes	Male	Female	p-value *	< 50 years	≥ 50 years	p-value *	+	-	p-value*
vacA
s1	157 (47.3)	116 (38.3)	0.005	151 (45.8)	122 (40)	0.11				273 (43)
s2	155 (46.7)	181 (59.7)		164 (49.7)	172 (56.4)					336 (52.9)
s1s2	20 (6)	6 (2)		15 (4.5)	11 (3.6)					26 (4.1)
i1	125 (41.9)	93 (33.3)	0.020	108 (35.5)	110 (40.3)	0.53				218 (37.8)
i2	141 (47.3)	159 (57)		157 (51.6)	143 (52.4)					300 (52)
i1i2	32 (10.7)	27 (9.7)		39 (12.8)	20 (7.3)					59 (10.2)
m1	146 (46.1)	108 (37)	0.009	137 (42.7)	117 (40.6)	0.518				254 (41.7)
m2	151 (47.6)	173 (59.2)		166 (51.7)	158 (54.9)					324 (53.2)
m1m2	20 (6.3)	11 (3.8)		18 (5.6)	13 (4.5)					31 (5.1)
s1m1i1	82 (24.4)	55 (18)	0.009#	73 (21.9)	64 (20.8)	0.652#	118 (86.1)	19 (13.9)	<0.001#	137 (21.4)
s2i2m2	91 (27.1)	120 (39.3)		108 (32.4)	103 (33.4)		84 (39.8)	127 (60.2)		211 (32.9)
s1i2m1	9 (2.7)	8 (2.6)		6 (1.8)	11 (3.6)		14 (82.4)	3 (17.6)		17 (2.7)
s1i1m2	10 (3)	6 (2)		11 (3.3)	5 (1.6)		14 (87.5)	2 (12.5)		16 (2.5)
s1i2m2	19 (5.7)	19 (6.2)		21 (6.3)	17 (5.5)		34 (89.5)	4 (10.5)		38 (5.9)
s2i1m1	10 (3)	12 (3.9)		9 (2.7)	13 (4.2)		14 (63.6)	8 (36.4)		22 (3.4)
s2i2m1	6 (1.8)	4 (1.3)		6 (1.8)	4 (1.3)		3 (30)	7 (70)		10 (1.6)
s2i1m2	12 (3.6)	13 (4.3)		8 (2.4)	17 (5.5)		11 (44)	14 (56)		25 (3.9)
Inc vac	40 (11.9)	31 (10.2)		28 (8.4)	43 (14)		28 (39.4)	43 (60.6)		71 (11.1)
Vac MI	55 (16.4)	36 (11.8)		61 (18.3)	30 (9.7)		71 (78)	20 (22)		91 (14.2)
VacA NT	2 (0.6)	1 (0.3)		2 (0.6)	1 (0.3)		1 (33.3)	2 (66.7)		3 (0.5)
cagA
+	212 (63.1)	180 (59)	0.290	224 (67.3)	168 (54.5)	0.001				392 (61.2)
-	124 (36.9)	125 (41)		109 (32.7)	140 (249)					249 (38.8)

Inc vacA: Incomplet VacA; Vac MI: Multiple infection; VacA NT: VacA not genotyped.

* p-value was considered only in cases with single-strain infection (identified on the basis of vacuolating cytotoxin gene (vacA alleles)

# Only the most predominant genotypes of the simple infection with complete vacA genotype (vacA s2i2m2, vacA s1i1m1 and the other combination allelic of vacA) were considered in the statistical analysis.

The distribution of the intermediate region of vacA among the s and m regions was studied in this series and reveals that 89% and 89.4% of vacA s1m1 and vacA s2m2 strains were vacA i1 and vacA i2 respectively. Also, our results show that 70.4% of the vacA s1m2 strains were vacA i2 “Table 2”.

Table 2

Association between H. pylori vacA alleles in studied isolates from Moroccan patients with single-strains infections.

		Intermediate region of vacA N (%)
	Subtype	i1	i2	p-value
vacA	s1m1	137 (89)	17 (11)	<0.001
	s2m2	25 (10.6)	211 (89.4)
	s1m2	16 (29.6)	38 (70.4)
	s2m1	22 (68.8)	10 (31.2)

Multiple infections (presence of the 2 alleles of the same vacA region (s, m or i)) and incomplete vacA (lack of the two alleles of the same vacA region) were detected in 14.2% (91) and 11.1% (71) respectively of the 641 subjects evaluated. Excluding these 2 profiles (incomplete vacA and multiple infection), vacA genotype distribution revealed a large predominance of vacA s2i2m2 with rates of 44.3% (211/476) while vacA s1i1m1, vacA s1i2m2, vacA s2i1m2 and vacA s2i1m1 were detected in 28.8% (137/476), 8% (38/476), 5.3% (25/476) and 4.6% (22/476) respectively. The rate of each genotype is reported in Table 1.

The correlation between cagA and vacA mosaic genotypes in only samples with simple infection and with complete vacA genotypes (1: vacA s1i1m1; 2: vacA s2i2m2; 3: Other less prevalent genotypes of vacA) was studied. The results show a significant association between vacA s1i1m1 and cagA+ and between vacA s2i2m2 and cagA- (p < 0.001) “Table 1”.

Correlation between age and sex with vacA genotypes and cagA status was also tested in two groups: the group 1 includes young patients aged less than 50 years while the group 2 includes those with 50 years and older. The statistical analysis revealed that the most virulent vacA alleles (s1, i1 and m1) are more predominant in men (47.3%, 41.9% and 46.1% respectively) than in women (38.3%, 33.3% and 37% respectively) (p = 0.005, 0.020 and 0.009 respectively), while cagA+ is more frequent in age group 1 (67.3%) than in age group 2 (54.5%) (p = 0.001) “Table 1”. However, the association between vacA genotypes and age did not reach a statistical significant value.

The distribution of the pathologies according to the patients gender, age, H. pylori infection, and H. pylori genotypes was also studied. The results show that GC, GU, and DU were predominant in men (63%, 69.7% and 73.7% cases respectively) while a high prevalence of gastritis was found among women (56.5%). According to the PCR results, H. pylori prevalence is high in all gastric disease with predominance in patients with GC (92.6%). The association of each of the three vacA regions with clinical outcomes shows that vacA s2, vacA i2 and vacA m2 were predominant in gastritis cases (59.5%, 59.9% and 58.7.5% respectively). VacA s1 was present in 57.4% of patients with DU (p <0.001), vacA i1 and vacA m1 were present in GC patients with rates of 73.3% and 65.7% respectively (p <0.001) (Table 3).

Table 3

Distribution of Demographic and risk factors of the gastro duodenal diseases.

		N (%)
		Gastritis	GU	DU	GC	P-value
	Positive	399 (54.1)	67 (56.3)	94 (70.7)	75 (92.6)	< 0.001
H. pylori	Negative	339 (45.9)	52 (43.7)	39 (29.3)	6 (7.4)
cagA	positive	229 (57.4)	44 (65.7)	74 (78.7)	42 (56)	0.001
	negative	170 (42.6)	23 (34.3)	20 (21.3)	33 (44)
vacA s	s1	145 (36.7)	37 (55.2)	54 (57.4)	32 (43.8)	< 0.001
	s2	235 (59.5)	26 (38.8)	34 (36.2)	40 (54.8)
	s1s2	15 (3.8)	4 (6)	6 (6.4)	1 (1.4)
vacA i	i1	112 (31.4)	24 (38.7)	35 (37.6)	44 (73.3)	< 0.001
	i2	214 (59.9)	34 (54.8)	40 (43)	12 (20)
	i1i2	31 (8.7)	4 (6.5)	18 (19.4)	4 (6.7)
vacA m	m1	137 (36.1)	27 (42.9)	40 (44.4)	46 (65.7)	< 0.001
	m2	223 (58.7)	31 (49.2)	45 (50)	24 (34.3)
	m1m2	20 (5.3)	5 (7.9)	5 (5.6)	0
vacA mosaic	s1i1m1	66 (16.5)	18 (26.9)	27 (28.7)	24 (32)	<0.001
	s1i2m1	12 (3)	3 (4.5)	2 (2.1)	0
	s1i1m2	13 (3.3)	0 (0)	2 (2.1)	1 (1.3)
	s1i2m2	21 (5.3)	8 (11.9)	8 (8.5)	1 (1.3)
	s2i1m1	11 (2.8)	1 (1.5)	0	9 (12)
	s2i2m1	7 (1.8)	1 (1.5)	0	2 (2.7)
	s2i1m2	13 (3.3)	1 (1.5)	3 (3.2)	8 (10.7)
	s2i2m2	159 (39.8)	18 (26.9)	26 (27.7)	8 (10.7)
	Inc VacA	44 (11)	7 (10.4)	3 (3.2)	16 (21.3)
	Multiple infection	51 (12.8)	10 (14.9)	23 (24.5)	5 (6.7)
	Not genotype	2 (0.5)	0	0	1 (1.3)
Sex	Male	321 (43.5)	83 (69.7)	98 (73.7)	51 (63)	< 0.001
	Female	417 (56.5)	36 (30.3)	35 (26.3)	30 (37)
Age	< 50 years	362 (49.1)	48 (40.3)	73 (54.9)	30 (37)	0.023
	≥ 50 years	376 (50.9)	71 (59.7)	60 (45.1)	51 (63)

To find out a possible association between vacA alleles (s, m and i) combination and the studied diseases, only the most predominant genotypes of the simple infections (vacA s2i2m2, vacA s1i1m1 and the other combination allelic of vacA) were considered in the statistical analysis and the results show that the rate of vacA s1i1m1 in GC patients was higher than the other vacA combinations. Also, a high prevalence of vacA s2i2m2 in gastritis patients was noted. While according to cagA gene status, cagA+ was higher in DU cases (78.7%) than the other pathologies (Table 3).

To evaluate the effect of each genotype and demographic characteristics on the occurrence of GC, we have considered the DU cases as reference control. Initially, univariate analysis was done and is shown in Table 4 and Table 5.

Table 4

Distribution of demographic and vacA alleles (single and associated) of H. pylori in duodenal ulcers and gastric cancer cases.

		N (%)
		DU	GC	p-value			DU	GC	p-value
H. pylori	+	94 (70.7)	75 (92.6)	>0.001	vacA si	s1i1	30 (42.3)	25 (46.3)	> 0.001
	-	39 (29.3)	6 (7.4)			s1i2	10 (14.1)	1 (1.9)
Sexe	Male	98 (73.7)	51 (63)	0.098		s2i1	4 (5.6)	18 (33.3)
	Female	35 (26.3)	30 (37)			s2i2	27 (38)	10 (18.5)
Age	< 50 years	73 (54.9)	30 (37)	0.011	vacA im	i1m1	27 (38.6)	33 (61.1)	0.002
	≥ 50 years	60 (45.1)	51 (63)			i2m1	2 (2.9)	2 (3.7)
vacA s	s1	54 (61.4)	32 (44.4)	0.033		i1m2	5 (7.1)	9 (16.7)
	s2	34 (38.6)	40 (55.6)			i2m2	36 (51.4)	10 (18.5)
vacA i	i1	35 (46.7)	44 (78.6)	>0.001	vacA sm	s1m1	39 (47.6)	30 (43.5)	> 0.001
	i2	40 (53.3)	12 (21.4)			s1m2	12 (14.6)	2 (2.9)
vacAm	m1	40 (47.1)	46 (65.7)	0.020		s2m1	1 (1.2)	16 (23.2)
	m2	45 (52.9)	24 (34.3)			s2m2	30 (36.6)	21 (30.4)
cagA	+	74 (78.7)	42 (56)	0.002	vacA sim	s1i1m1	27 (39.7)	24 (45.3)	0.011
	-	20 (21.3)	33 (44)			s2i2m2	26 (38.2)	8 (15.1)
						other	15 (22.1)	21 (39.6)

Table 5

Distribution of vacA and cagA combination of H. pylori in duodenal ulcers and gastric cancer cases.

		N (%)
		DU	GC	p-value			DU	GC	p-value
vacAs/cagA	s1cagA+	48 (54.5)	24 (33.3)	0.013	vacA sm/cagA	s1m1cagA+	34 (41.5)	22 (31.9)	0.005
	s1cagA-	6 (6.8)	8 (11.1)			s1m1cagA-	5 (6.1)	8 (11.6)
	s2cagA+	21 (23.9)	16 (22.2)			s2m2cagA+	18 (22)	11 (15.9)
	s2cagA-	13 (14.8)	24 (33.3)			s2m2cagA-	12 (14.6)	10 (14.5)
vacA i/cagA	i1cagA+	31 (41.3)	26 (46.4)	>0.001		other vacA/cagA+	13 (15.9)	7 (10.1)
	i1cagA-	4 (5.3)	18 (32.1)			other vacA/cagA-	0	11 (15.9)
	i2cagA+	27 (36)	7 (12.5)		vacA mi/cagA	m1i1/cagA+	24 (34.3)	22 (40.7)	> 0.001
	i2cagA-	13 (17.3)	5 (8.9)			m1i1/cagA-	3 (4.3)	11 (20.4)
vacAm/cagA	m1cagA+	35 (41.2)	27 (38.6)	0.002		m2i2/cagA+	24 (34.3)	7 (13)
	m1cagA-	5 (5.9)	19 (27.1)			m2i2/cagA-	12 (17.1)	3 (5.6)
	m2cagA+	32 (37.6)	14 (20)			other cagA+	6 (8.6)	4 (7.4)
	m2cagA-	13 (15.3)	10 (14.3)			other/cagA-	1 (1.4)	7 (13)
vacA si/cagA	s1i1/casgA+	27 (38)	18 (33.3)	0.004	vacA sim/cagA	s1i1m1cagA+	24 (35.3)	17 (32.1)	0.001
	s1i1/cagA-	3 (4.2)	7 (13)			s1i1m1/cagA-	3 (4.4)	7 (13.2)
	s2i2/cagA+	15 (21.1)	5 (9.3)			s2i2m2/cagA+	15 (22.1)	5 (9.4)
	s2i2/cagA-	12 (16.9)	5 (9.3)			s2i2m2/cagA-	11 (16.2)	3 (5.7)
	other/cagA+	13 (18.3)	9 (16.7)			other vacA/cagA+	14 (20.6)	10 (18.9)
	other/cagA-	1 (1.4)	10 (18.5)			other vacA/cagA-	1 (1.5)	11 (20.8)

Thereafter, logistic regression analysis was performed and the results show that vacA i1m1 and vacA i1m2 genotypes were strongly associated with the risk of GC, the Odds Ratio (95% confidence interval) was 29.73 [5.08–173.73]) and 9.17 [2.06–40.82] respectively while vacAs1/cagA+ seem to be more associated to DU since it’s less present in GC cases, (OR: 0.13 [0.02–0.75] when compared with DU group “Table 6”.

Table 6

Risk for GC in relation to vacAs/cagA combination and i- and m-region of vacA gene in a simple logistic regression analysis.

		Frequency (%)		Simple logistic regression
		DU	GC	OR	95% IC	p-value
vacAs/cagA	s1/cagA+	48 (54.5)	24 (33.3)	0.06	[0.01–0.37]	0.002
	s1/cagA-	6 (6.8)	8 (11.1)	0.19	[0.02–1.80]	0.152
	s2/cagA+	21 (23.9)	16 (22.2)	0.78	[0.21–2.84]	0.711
	s2/cagA-	13 (14.8)	24 (33.3)	1 (ref)	1 (ref)
vacA im	i1m1	27 (38.6)	33 (61.1)	29.73	[5.08–173.73]	< 0.001
	i2m1	2 (2.9)	2 (3.7)	9.84	[0.66–145.84]	0.096
	i1m2	5 (7.1)	9 (16.7)	9.17	[2.06–40.82]	0.004
	i2m2	36 (51.4)	10 (18.5)	1 (ref)	1 (ref)

Discussion

The H. pylori infection is strongly associated with peptic ulcer disease (PUD), gastric carcinoma, and gastric mucosa-associated lymphoid tissue (MALT) [15]. This bacterium is known for its high genetic diversity that occurs mainly in the bacterium virulence factors as the cytotoxin-associated gene (cagA) and the vacuolating cytotoxin (vacA) gene. The variability that affects these two genes may be useful to better understand the differences in the pathogenesis and the role of each genotype in the occurrence of the pathology. In fact, polymorphisms within vacA have been analyzed in several previous studies, but they have primarily focused on the signal region (s region) and the mid-region (m region), both of which have been used to predict the clinical outcome of infected patients. In Morocco, we have previously studied the polymorphism of vacA in those two regions (signal sequences (s) and mid-region (m)) and established their correlation to clinical outcomes and also to histological lesions[1,10]. Of note, in this study, we confirmed that the studied population was predominantly infected by the less virulent H. pylori strains (vacA s2m2) and we confirmed a significant association between vacA m1 and GC. However, it will be for interest to study vacA i alone and in combination to cagA status and to s and m vacA region in a large sampling to better characterize isolates that may lead to severe diseases, mainly the GC.

H. pylori is known to colonize more than half of the world’s population but the infection rate varies across geographic regions. Its prevalence differs by age, race, and socioeconomic level. In this series, H. pylori infection prevalence was 59.4%, this rate is comparable to our previous study (59.7%) [1] and to other developing countries but it is higher than in developed ones [16].

It is well known that almost all H. pylori strains contain the vacA gene, likewise in the current study we found it in 99.06% of cases. This rate is higher than those reported from Ethiopia (90%) and Netherlands (93%) [9,17]. The failure on vacA gene detection in 0.94% cases can be due to the genomic diversity of the bacteria which can be due to point mutations in the conserved genes. In fact, the multiple infection contribute to the genetic diversity by the extensive inter strain gene transfer and recombination that include large insertions or deletions and chromosomal rearrangements [18]. In this study, the presence of multiple H. pylori strains in a single biopsy specimen was found in 14.2% of cases. This was similar to the results obtained in Senegal (14%), Netherlands (11%), North of America (11%), Brazil (13%), India (15.9%) and Spain (19.2%) [7,19-22], and it was lower compared to the reported results in Tunisia (31.4%) Chile (32%) and Portugal (37.3%) [23-25]. The presence of multiple infections in developed countries as in the developing countries is totally inconsistent with the idea that mixed infections predominate only in the developing countries by the fact that it can be related to the high prevalence of H. pylori [26].

The polymorphism in the vacA gene sequence has been studied in three variable regions, and the vacA genotyping revealed the predominance of vacA s2, vacA i2 and vacA m2 alleles which were present in 52.9%, 52% and 53.2% of the cases respectively (Table 1). This distribution is almost similar to the follow-up study conducted on Spanish population [7,27] where these alleles (vacA s2, vacA i2 and vacA m2) were present in 53.6%, 55.7% and 52%, and to the epidemiological study conducted on Kenyan population [28], where the vacA s2, vacA i2 and vacA m2 alleles were found at 49%, 52% and 65%, respectively. However, it’s totally different from the profile reported in Bulgaria and Senegal, where vacA s1, vacA i1 and vacA m1 alleles were predominant [8,29]. The results are also different from those obtained in Vietnam and marked by the predominance of vacA s1, vacA i1 and vacA m2 alleles [30].Those results show a great diversity of the bacterium.

All possible combinations of the three vacA regions “Table 1” have been reported, showing a high genetic diversity in our H. pylori clinical isolates. Excluding the multiple infection and the incomplete vacA, vacA genotype distribution reveals a large predominance of vacA s2i2m2 with a rate of 44.3% (n = 211), while vacA s1i1m1, vacA s1i2m2, vacA s2i1m2 and vacA s2i1m1 were detected in 28.8% (n = 137), 8% (n = 38), 5.3% (n = 25) and 4.6% (n = 22) of cases respectively. Unfortunately, there is no data from the North African countries regarding the polymorphism of the three region of vacA. In our study, the determined distribution is almost similar to the one determined among Sicilian and Kenyan patients [28,31] and differs from the others reported among European, Senegalese, Iranian, Malaysian and the South Korean ones, where vacAs1i1m1 was the most predominant genotype [8,32-34], while vacA s1i2m2 was the prevalent genotype in Iranian population [35]. This difference may explain the predominance of severe diseases in these regions. In effect, it is well established that the countries with high rates of severe diseases have strains carrying the vacA active forms [5]. This was confirmed by our moderate rate of vacA s1i1m1 strains in the studied population related to the lowest rate of the serious diseases like gastric cancer.

In the present study, the distribution of the intermediate region of vacA among the s and m regions reveals that 89% and 89.4% of vacA s1m1 and vacA s2m2 strains were vacA i1 and vacA i2 respectively (Table 2), which is similar to the results of alleles association in most studies [5,8,36]. Also, our results show that 29.62% of the vacA s1m2 strains were vacA i1, when it was 66.7% in Uruguayan, 92% in Chinese, 71.4% in U.S.African strains and 66.7% in East Asian [36,37]. This might be one hypothesis to explain the African enigma, since as it was approached by Rhead and Coll, strains of vacA s1i1m2 genotype are more virulent, and more associated with GC than the vacA s1i2m2 genotype [5].

The prevalence of H. pylori cagA+ (61.2%) confirm the data obtained in our previous study (59.6%)on smaller sampling [1].

Our study also demonstrates that vacA i1 was strongly associated with the vacA s1, vacA m1 and cagA+ genotypes. As well, vacA i2 was strongly associated with the vacA s2, vacA m2 and cagA- genotypes (p<0.001), suggesting that the polymorphism of vacA gene may affect the functional interaction with cagA [38]. Those results are in agreement with numerous data from Chinese, U.S. African, Uruguayan, Iranian, Iraqi, Jordanian and Turkish studies reporting that H. pylori strains containing the active vacA gene (s1i1m1) carry also cagA gene, and H. pylori strains that carry the inactive vacA gene (s2i2m2) lack the cagA gene [5,37,39-41]; this clustering of active virulence factors within H. pylori strains classified H. pylori to be virulent or nonvirulent.

In this series, vacA genotypes were significantly associated to the patient’s gender. Effectively, the rate of vacA s1i1m1 was higher in men than in women while the rate of vacA s2i2m2 was higher in women than in men (p = 0.009). This finding confirms that men are more susceptible to develop severe disease than women; these results are confirmed in the present study in which GC, GU, and DU were predominantly present in men (63%, 69.7% and 73.7% cases respectively). These results confirmed those reported in Bulgarian patients, who have reported a high rate of strains containing the less virulent genotype (vacA s1i2m2) in women than in men [29].

In our results, cagA is significantly associated with age and is predominant in younger patients (67.3%) vs (54.5%) older ones (p = 0.001). And despite the absence of significant difference in vacA genotypes distribution according to the age, we noted that in contrary to vacA i1 allele, vacA s1 and vacA m1 are increased slightly in age group 1 than in age group 2 which is in disagreement with the work of Alarcón and his colleagues who report that the prevalence of cagA, vacA s1, vacA i1 and vacA m1 were more frequent in older patients than in younger [42]. This raises the hypothesis on the evolution of vacA H. pylori genes in our population towards virulent form, presumably, due to adaptation of the bacteria to the host immune responses and to the environmental change. In fact, Gangwer et al., supposed in 2010 that H. pylori cagA and vacA can evolved separately from the bacteria core genome [43].

The results show also that patients with severe diseases (GU, DU and GC) are commonly infected with vacA s1, vacA m1 and vacA i1 strains (except of patients with gastric cancer who are frequently infected with vacA s2, vacA m1 and vacA i1 alleles) in contrast to patients with gastritis who are commonly infected with vacA s2, vacA m2 and vacA i2 strains (Table 3). Similar results were found in Western populations, while in East Asian population, vacA s1, vacA m1 and vacA i1 alleles were common in both dyspeptic and non-dyspeptic patients. In this regard, the profile of our strains and their association to the pathologies are similar to those isolated in Western populations, since the active form of vacA is not so prevalent and is more frequently found in ulcer or gastric cancer patients from Western populations, conversely, in the Eastern populations, these genotypes has been detected in almost all H. pylori strains. This finding will be confirmed by the studying of cagA EPIYA motifs polymorphism.

Since gastritis can evolved towards GU which predispose to GC disease, and since DU and GC seem to be mutually exclusive outcomes of H. pylori infection [44], only this two pathologies were used in statistical analysis to determine their risk factors. In univariate analysis, vacA s2 allele (the least virulent) is significantly associated with gastric cancer (Table 4). Also high prevalent of this allele was reported in GC cases in our previous study [10]. Likewise, the less virulent genotypes (vacA s2, vacA m2 and vacA s2m2) were reported in patients with MALT lymphoma among Mexican, Germany and French populations respectively [45-47]. Those results are in disagreement with several previous studies that report a high rate of the virulent alleles (vacA s1, vacA m1, and vacA i1) in patient with sever diseases [48-50]. Indeed, vacA s2 genotype encodes a short extension of the N-terminal peptide on the mature protein, which blocks the vacuolating activity [51]. So, the occurrence of vacA s2 in GC lets suppose that: i) the possible involvement of other factors including human genetic polymorphisms and diet in the gastric cancer genesis [10] ii) a high bacterial load in patients is a factor of gastric cancer genesis independently of the bacterial genotype. In effect, some studies reported an association between an high rate of the bacterium and the development of severe diseases independently to their virulence factors [52,53].

H. pylori infection is an etiological factor common to GC and DU diseases and may be one of the major causative factors of those opposite end outcome of the infection. So it is practical to find the H. pylori genotypes associated to each disease. Despite the common distribution of the active form of vacA and cagA genes among different H. pylori isolates in patients with DU and GC and the difficulty to distinguish H. pylori strains associated to GC from those associated to DU in the previous studies, the regression analysis results of the present study (Table 6) shows that:

Patients infected with vacA i1m1 and vacA i1m2 have a significant 29.73 fold (95%, CI, 5.05–173.73) and 9.17 fold (95%, CI, 2.06–40.82) respectively increased risk of GC in comparison with those infected with vacA i2m2 strains. This significant association let’s suppose that vacA i is more important in predicting the risk of GC in our series. This result support those reported in Iran, Spain, United States and Colombia [5,27,32,37,54] and is inconsistent with studies that report the non usefulness of this gene as a risk factor for GC [55-57].

The infected patients with strains carrying the vacA s1 allele and cagA gene have a greater probability of developing DU than GC since we have compared GC with DU. This finding supports the role of vacA s1 and cagA+ in the development of ulceration, confirming previous studies in western countries [3,19]. However, a study conducted on Portuguese patients reported the associations of this genotypes with both of GC and DU diseases [25].

These results suggest the presence of separate pathways to discriminate the risk of GC development from DU and suggest that H. pylori genotypes may play an important role in the infection outcomes. However, the apparent discrepancy between our results and those reported in other studies could be related to geographic variations between H. pylori strains, or probably by differences in the population origins or inflammatory responses governed by host genetics. Overall, the association between virulence factors and disease outcomes can be hampered by the difference in food habits and living conditions in each region as well as by dissimilarity of the compared gastric diseases. In fact, none of the previous studies has compared the GC with DU but they used either nonulcer disease or chronic gastritis as control groups. Those groups could be evolved towards GC or DU, inversely DU and GG seems to be two “mutually exclusive” end outcomes of H. pylori infection [44]. Indeed, conclusions data derived from a single geographic region will not be considered as representative of what will be found in other geographical regions.

Conclusions

This study indicates that: i) H. pylori strains isolated from Moroccan patients are extremely diverse, ii) the less virulent strain vacA s2i2m2 is the most predominant in Morocco which can partially explain the African enigma, iii) vacAs1/cagA+ seems to be a risk factor for DU, iv) vacA i1 genotype (independently to vacA m status) isstrongly associated to the GC. So, patients infected with this genotype may need more attention. Therefore, vacA i1 may be of a clinical usefulness to identify patients at a high risk of GC development.