Literature DB >> 28107647

Programmed Ribosomal Frameshifting Generates a Copper Transporter and a Copper Chaperone from the Same Gene.

Sezen Meydan1, Dorota Klepacki1, Subbulakshmi Karthikeyan1, Tõnu Margus1, Paul Thomas2, John E Jones3, Yousuf Khan3, Joseph Briggs3, Jonathan D Dinman3, Nora Vázquez-Laslop4, Alexander S Mankin5.   

Abstract

Metal efflux pumps maintain ion homeostasis in the cell. The functions of the transporters are often supported by chaperone proteins, which scavenge the metal ions from the cytoplasm. Although the copper ion transporter CopA has been known in Escherichia coli, no gene for its chaperone had been identified. We show that the CopA chaperone is expressed in E. coli from the same gene that encodes the transporter. Some ribosomes translating copA undergo programmed frameshifting, terminate translation in the -1 frame, and generate the 70 aa-long polypeptide CopA(Z), which helps cells survive toxic copper concentrations. The high efficiency of frameshifting is achieved by the combined stimulatory action of a "slippery" sequence, an mRNA pseudoknot, and the CopA nascent chain. Similar mRNA elements are not only found in the copA genes of other bacteria but are also present in ATP7B, the human homolog of copA, and direct ribosomal frameshifting in vivo.
Copyright © 2017 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  copA; nascent peptide; pseudoknot; recoding; ribosome profiling; slippery sequence; translation regulation

Mesh:

Substances:

Year:  2017        PMID: 28107647      PMCID: PMC5270581          DOI: 10.1016/j.molcel.2016.12.008

Source DB:  PubMed          Journal:  Mol Cell        ISSN: 1097-2765            Impact factor:   17.970


  76 in total

Review 1.  Iron and copper metabolism.

Authors:  Miguel Arredondo; Marco T Núñez
Journal:  Mol Aspects Med       Date:  2005 Aug-Oct

2.  The conserved GTPase LepA contributes mainly to translation initiation in Escherichia coli.

Authors:  Rohan Balakrishnan; Kenji Oman; Shinichiro Shoji; Ralf Bundschuh; Kurt Fredrick
Journal:  Nucleic Acids Res       Date:  2014-11-06       Impact factor: 16.971

3.  A functional -1 ribosomal frameshift signal in the human paraneoplastic Ma3 gene.

Authors:  Norma M Wills; Barry Moore; Andrew Hammer; Raymond F Gesteland; John F Atkins
Journal:  J Biol Chem       Date:  2006-01-05       Impact factor: 5.157

4.  Independent evolution of heavy metal-associated domains in copper chaperones and copper-transporting atpases.

Authors:  I K Jordan; D A Natale; E V Koonin; M Y Galperin
Journal:  J Mol Evol       Date:  2001-12       Impact factor: 2.395

5.  Regulation of gene expression by macrolide-induced ribosomal frameshifting.

Authors:  Pulkit Gupta; Krishna Kannan; Alexander S Mankin; Nora Vázquez-Laslop
Journal:  Mol Cell       Date:  2013-11-14       Impact factor: 17.970

6.  Multiplexed size separation of intact proteins in solution phase for mass spectrometry.

Authors:  John C Tran; Alan A Doucette
Journal:  Anal Chem       Date:  2009-08-01       Impact factor: 6.986

7.  IPknot: fast and accurate prediction of RNA secondary structures with pseudoknots using integer programming.

Authors:  Kengo Sato; Yuki Kato; Michiaki Hamada; Tatsuya Akutsu; Kiyoshi Asai
Journal:  Bioinformatics       Date:  2011-07-01       Impact factor: 6.937

8.  Signals for ribosomal frameshifting in the Rous sarcoma virus gag-pol region.

Authors:  T Jacks; H D Madhani; F R Masiarz; H E Varmus
Journal:  Cell       Date:  1988-11-04       Impact factor: 41.582

Review 9.  Changed in translation: mRNA recoding by -1 programmed ribosomal frameshifting.

Authors:  Neva Caliskan; Frank Peske; Marina V Rodnina
Journal:  Trends Biochem Sci       Date:  2015-04-04       Impact factor: 13.807

10.  KnotInFrame: prediction of -1 ribosomal frameshift events.

Authors:  Corinna Theis; Jens Reeder; Robert Giegerich
Journal:  Nucleic Acids Res       Date:  2008-09-27       Impact factor: 16.971

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  31 in total

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Journal:  Methods Mol Biol       Date:  2021

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Authors:  Viktoriya S Anokhina; John D McAnany; Jessica H Ciesla; Thomas A Hilimire; Netty Santoso; Hongyu Miao; Benjamin L Miller
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Review 3.  Translation Elongation and Recoding in Eukaryotes.

Authors:  Thomas E Dever; Jonathan D Dinman; Rachel Green
Journal:  Cold Spring Harb Perspect Biol       Date:  2018-08-01       Impact factor: 10.005

4.  Molecular Insights into the Copper-Sensitive Operon Repressor in Acidithiobacillus caldus.

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Journal:  Appl Environ Microbiol       Date:  2021-07-27       Impact factor: 4.792

5.  Correction of frameshift mutations in the atpB gene by translational recoding in chloroplasts of Oenothera and tobacco.

Authors:  Irina Malinova; Arkadiusz Zupok; Amid Massouh; Mark Aurel Schöttler; Etienne H Meyer; Liliya Yaneva-Roder; Witold Szymanski; Margit Rößner; Stephanie Ruf; Ralph Bock; Stephan Greiner
Journal:  Plant Cell       Date:  2021-07-02       Impact factor: 11.277

Review 6.  From Recoding to Peptides for MHC Class I Immune Display: Enriching Viral Expression, Virus Vulnerability and Virus Evasion.

Authors:  John F Atkins; Kate M O'Connor; Pramod R Bhatt; Gary Loughran
Journal:  Viruses       Date:  2021-06-27       Impact factor: 5.048

7.  Quantitative Control for Stoichiometric Protein Synthesis.

Authors:  James C Taggart; Jean-Benoît Lalanne; Gene-Wei Li
Journal:  Annu Rev Microbiol       Date:  2021-08-03       Impact factor: 16.232

8.  Live-Cell Single RNA Imaging Reveals Bursts of Translational Frameshifting.

Authors:  Kenneth Lyon; Luis U Aguilera; Tatsuya Morisaki; Brian Munsky; Timothy J Stasevich
Journal:  Mol Cell       Date:  2019-06-06       Impact factor: 19.328

Review 9.  Bacterial copper storage proteins.

Authors:  Christopher Dennison; Sholto David; Jaeick Lee
Journal:  J Biol Chem       Date:  2018-02-06       Impact factor: 5.157

Review 10.  Copper Homeostatic Mechanisms and Their Role in the Virulence of Escherichia coli and Salmonella enterica.

Authors:  Amanda Hyre; Kaitlin Casanova-Hampton; Sargurunathan Subashchandrabose
Journal:  EcoSal Plus       Date:  2021-06-14
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