Literature DB >> 31101492

Enhancing the ligand efficiency of anti-HIV compounds targeting frameshift-stimulating RNA.

Viktoriya S Anokhina1, John D McAnany2, Jessica H Ciesla1, Thomas A Hilimire1, Netty Santoso3, Hongyu Miao4, Benjamin L Miller5.   

Abstract

Ribosomal frameshifting, a process whereby a translating ribosome is diverted from one reading frame to another on a contiguous mRNA, is an important regulatory mechanism in biology and an opportunity for therapeutic intervention in several human diseases. In HIV, ribosomal frameshifting controls the ratio of Gag and Gag-Pol, two polyproteins critical to the HIV life cycle. We have previously reported compounds able to selectively bind an RNA stemloop within the Gag-Pol mRNA; these compounds alter the production of Gag-Pol in a manner consistent with increased frameshifting. Importantly, they also display antiretroviral activity in human T-cells. Here, we describe new compounds with significantly reduced molecular weight, but with substantially maintained affinity and anti-HIV activity. These results suggest that development of more "ligand efficient" enhancers of ribosomal frameshifting is an achievable goal.
Copyright © 2019 Elsevier Ltd. All rights reserved.

Entities:  

Year:  2019        PMID: 31101492      PMCID: PMC6589821          DOI: 10.1016/j.bmc.2019.05.009

Source DB:  PubMed          Journal:  Bioorg Med Chem        ISSN: 0968-0896            Impact factor:   3.641


  30 in total

1.  Strategies for recognition of stem-loop RNA structures by synthetic ligands: application to the HIV-1 frameshift stimulatory sequence.

Authors:  Prakash B Palde; Leslie O Ofori; Peter C Gareiss; Jaclyn Lerea; Benjamin L Miller
Journal:  J Med Chem       Date:  2010-08-26       Impact factor: 7.446

2.  Infection with multidrug resistant, dual-tropic HIV-1 and rapid progression to AIDS: a case report.

Authors:  Martin Markowitz; Hiroshi Mohri; Saurabh Mehandru; Anita Shet; Leslie Berry; Roopa Kalyanaraman; Alexandria Kim; Chris Chung; Patrick Jean-Pierre; Amir Horowitz; Melissa La Mar; Terri Wrin; Neil Parkin; Michael Poles; Christos Petropoulos; Michael Mullen; Daniel Boden; David D Ho
Journal:  Lancet       Date:  2005 Mar 19-25       Impact factor: 79.321

Review 3.  RNA-dominant diseases.

Authors:  Robert J Osborne; Charles A Thornton
Journal:  Hum Mol Genet       Date:  2006-10-15       Impact factor: 6.150

4.  Resin-bound dynamic combinatorial chemistry.

Authors:  Brian R McNaughton; Benjamin L Miller
Journal:  Org Lett       Date:  2006-04-27       Impact factor: 6.005

5.  Identification of a selective small-molecule ligand for HIV-1 frameshift-inducing stem-loop RNA from an 11,325 member resin bound dynamic combinatorial library.

Authors:  Brian R McNaughton; Peter C Gareiss; Benjamin L Miller
Journal:  J Am Chem Soc       Date:  2007-08-28       Impact factor: 15.419

Review 6.  Ribosomal frameshifting: an emerging drug target for HIV.

Authors:  Peter C Gareiss; Benjamin L Miller
Journal:  Curr Opin Investig Drugs       Date:  2009-02

Review 7.  Targeting RNA with small molecules.

Authors:  Jason R Thomas; Paul J Hergenrother
Journal:  Chem Rev       Date:  2008-03-25       Impact factor: 60.622

8.  Maintenance of the Gag/Gag-Pol ratio is important for human immunodeficiency virus type 1 RNA dimerization and viral infectivity.

Authors:  M Shehu-Xhilaga; S M Crowe; J Mak
Journal:  J Virol       Date:  2001-02       Impact factor: 5.103

9.  RNA-ligand interactions: affinity and specificity of aminoglycoside dimers and acridine conjugates to the HIV-1 Rev response element.

Authors:  Nathan W Luedtke; Qi Liu; Yitzhak Tor
Journal:  Biochemistry       Date:  2003-10-07       Impact factor: 3.162

10.  In vitro characterization of multidrug-resistant HIV-1 isolates from a recently infected patient associated with dual tropism and rapid disease progression.

Authors:  Hiroshi Mohri; Martin Markowitz
Journal:  J Acquir Immune Defic Syndr       Date:  2008-08-15       Impact factor: 3.731

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  4 in total

1.  Small molecule-RNA targeting: starting with the fundamentals.

Authors:  Amanda E Hargrove
Journal:  Chem Commun (Camb)       Date:  2020-11-26       Impact factor: 6.222

2.  Expanding the known structure space for RNA binding: a test of 2,5-diketopiperazine.

Authors:  Diego M Arévalo; Viktoriya S Anokhina; Oliver L R Swart; Benjamin L Miller
Journal:  Org Biomol Chem       Date:  2022-01-19       Impact factor: 3.876

3.  Systematic analysis of the interactions driving small molecule-RNA recognition.

Authors:  G Padroni; N N Patwardhan; M Schapira; A E Hargrove
Journal:  RSC Med Chem       Date:  2020-06-04

4.  Translational recoding: canonical translation mechanisms reinterpreted.

Authors:  Marina V Rodnina; Natalia Korniy; Mariia Klimova; Prajwal Karki; Bee-Zen Peng; Tamara Senyushkina; Riccardo Belardinelli; Cristina Maracci; Ingo Wohlgemuth; Ekaterina Samatova; Frank Peske
Journal:  Nucleic Acids Res       Date:  2020-02-20       Impact factor: 16.971

  4 in total

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