Literature DB >> 29632265

Self-organization across scales: from molecules to organisms.

Tanumoy Saha1,2, Milos Galic3,2.   

Abstract

Creating ordered structures from chaotic environments is at the core of biological processes at the subcellular, cellular and organismic level. In this perspective, we explore the physical as well as biological features of two prominent concepts driving self-organization, namely phase transition and reaction-diffusion, before closing with a discussion on open questions and future challenges associated with studying self-organizing systems.This article is part of the theme issue 'Self-organization in cell biology'.
© 2018 The Author(s).

Keywords:  phase transition; reaction–diffusion; self-organization

Mesh:

Year:  2018        PMID: 29632265      PMCID: PMC5904299          DOI: 10.1098/rstb.2017.0113

Source DB:  PubMed          Journal:  Philos Trans R Soc Lond B Biol Sci        ISSN: 0962-8436            Impact factor:   6.237


  57 in total

Review 1.  The reaction-diffusion system: a mechanism for autonomous pattern formation in the animal skin.

Authors:  Shigeru Kondo
Journal:  Genes Cells       Date:  2002-06       Impact factor: 1.891

Review 2.  Leading the way: Directional sensing through phosphatidylinositol 3-kinase and other signaling pathways.

Authors:  Sylvain Merlot; Richard A Firtel
Journal:  J Cell Sci       Date:  2003-09-01       Impact factor: 5.285

3.  Concentration dependent diffusion of self-propelled rods.

Authors:  Arshad Kudrolli
Journal:  Phys Rev Lett       Date:  2010-02-23       Impact factor: 9.161

4.  Spatiotemporal Control of Intracellular Phase Transitions Using Light-Activated optoDroplets.

Authors:  Yongdae Shin; Joel Berry; Nicole Pannucci; Mikko P Haataja; Jared E Toettcher; Clifford P Brangwynne
Journal:  Cell       Date:  2016-12-29       Impact factor: 41.582

5.  Hox genes regulate digit patterning by controlling the wavelength of a Turing-type mechanism.

Authors:  Rushikesh Sheth; Luciano Marcon; M Félix Bastida; Marisa Junco; Laura Quintana; Randall Dahn; Marie Kmita; James Sharpe; Maria A Ros
Journal:  Science       Date:  2012-12-14       Impact factor: 47.728

6.  How cells flow in the spreading of cellular aggregates.

Authors:  Grégory Beaune; Tomita Vasilica Stirbat; Nada Khalifat; Olivier Cochet-Escartin; Simon Garcia; Vasily Valérïévitch Gurchenkov; Michael P Murrell; Sylvie Dufour; Damien Cuvelier; Françoise Brochard-Wyart
Journal:  Proc Natl Acad Sci U S A       Date:  2014-05-16       Impact factor: 11.205

7.  A reaction-diffusion wave on the skin of the marine angelfish Pomacanthus.

Authors:  S Kondo; R Asal
Journal:  Nature       Date:  1995-08-31       Impact factor: 49.962

Review 8.  Biology under construction: in vitro reconstitution of cellular function.

Authors:  Allen P Liu; Daniel A Fletcher
Journal:  Nat Rev Mol Cell Biol       Date:  2009-08-12       Impact factor: 94.444

9.  Phase transitions in the assembly of multivalent signalling proteins.

Authors:  Pilong Li; Sudeep Banjade; Hui-Chun Cheng; Soyeon Kim; Baoyu Chen; Liang Guo; Marc Llaguno; Javoris V Hollingsworth; David S King; Salman F Banani; Paul S Russo; Qiu-Xing Jiang; B Tracy Nixon; Michael K Rosen
Journal:  Nature       Date:  2012-03-07       Impact factor: 49.962

10.  Myosin motors drive long range alignment of actin filaments.

Authors:  Tariq Butt; Tabish Mufti; Ahmad Humayun; Peter B Rosenthal; Sohaib Khan; Shahid Khan; Justin E Molloy
Journal:  J Biol Chem       Date:  2009-11-24       Impact factor: 5.157

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  4 in total

1.  Self-organization: the fundament of cell biology.

Authors:  Roland Wedlich-Söldner; Timo Betz
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2018-05-26       Impact factor: 6.237

2.  Introducing chaotic codes for the modulation of code modulated visual evoked potentials (c-VEP) in normal adults for visual fatigue reduction.

Authors:  Zahra Shirzhiyan; Ahmadreza Keihani; Morteza Farahi; Elham Shamsi; Mina GolMohammadi; Amin Mahnam; Mohsen Reza Haidari; Amir Homayoun Jafari
Journal:  PLoS One       Date:  2019-03-06       Impact factor: 3.240

3.  Toward New Modalities in VEP-Based BCI Applications Using Dynamical Stimuli: Introducing Quasi-Periodic and Chaotic VEP-Based BCI.

Authors:  Zahra Shirzhiyan; Ahmadreza Keihani; Morteza Farahi; Elham Shamsi; Mina GolMohammadi; Amin Mahnam; Mohsen Reza Haidari; Amir Homayoun Jafari
Journal:  Front Neurosci       Date:  2020-11-17       Impact factor: 4.677

4.  Self-organization of nanoparticles and molecules in periodic Liesegang-type structures.

Authors:  Amanda J Ackroyd; Gábor Holló; Haridas Mundoor; Honghu Zhang; Oleg Gang; Ivan I Smalyukh; István Lagzi; Eugenia Kumacheva
Journal:  Sci Adv       Date:  2021-04-16       Impact factor: 14.136

  4 in total

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