Literature DB >> 32551936

Metabolomics as an Emerging Tool in the Search for Astrobiologically Relevant Biomarkers.

Lauren Seyler1,2, Elizabeth B Kujawinski1, Armando Azua-Bustos3,4, Michael D Lee2,5, Jeffrey Marlow2,6,7, Scott M Perl8,9, Henderson James Cleaves Ii2,10,11,12.   

Abstract

It is now routinely possible to sequence and recover microbial genomes from environmental samples. To the degree it is feasible to assign transcriptional and translational functions to these genomes, it should be possible, in principle, to largely understand the complete molecular inputs and outputs of a microbial community. However, gene-based tools alone are presently insufficient to describe the full suite of chemical reactions and small molecules that compose a living cell. Metabolomic tools have developed quickly and now enable rapid detection and identification of small molecules within biological and environmental samples. The convergence of these technologies will soon facilitate the detection of novel enzymatic activities, novel organisms, and potentially extraterrestrial life-forms on solar system bodies. This review explores the methodological problems and scientific opportunities facing researchers who hope to apply metabolomic methods in astrobiology-related fields, and how present challenges might be overcome.

Entities:  

Keywords:  Biogeochemistry. Astrobiology 20, 1251–1261; Biomarkers; Biosignatures; Metabolism; Molecular fossils

Year:  2020        PMID: 32551936      PMCID: PMC7116171          DOI: 10.1089/ast.2019.2135

Source DB:  PubMed          Journal:  Astrobiology        ISSN: 1557-8070            Impact factor:   4.335


  119 in total

Review 1.  The long-term carbon cycle, fossil fuels and atmospheric composition.

Authors:  Robert A Berner
Journal:  Nature       Date:  2003-11-20       Impact factor: 49.962

2.  Life before RNA.

Authors:  Stephen J Sowerby; George B Petersen
Journal:  Astrobiology       Date:  2002       Impact factor: 4.335

3.  Characterization of a Yellowstone hot spring microbial community by 5S rRNA sequences.

Authors:  D A Stahl; D J Lane; G J Olsen; N R Pace
Journal:  Appl Environ Microbiol       Date:  1985-06       Impact factor: 4.792

4.  Correlating microbial diversity patterns with geochemistry in an extreme and heterogeneous environment of mine tailings.

Authors:  Jun Liu; Zheng-Shuang Hua; Lin-Xing Chen; Jia-Liang Kuang; Sheng-Jin Li; Wen-Sheng Shu; Li-Nan Huang
Journal:  Appl Environ Microbiol       Date:  2014-06       Impact factor: 4.792

5.  Atmospheric pressure MALDI mass spectrometry imaging of tissues and cells at 1.4-μm lateral resolution.

Authors:  Mario Kompauer; Sven Heiles; Bernhard Spengler
Journal:  Nat Methods       Date:  2016-11-14       Impact factor: 28.547

6.  Functional association prediction by community profiling.

Authors:  Dazhi Jiao; Wontack Han; Yuzhen Ye
Journal:  Methods       Date:  2017-04-26       Impact factor: 3.608

Review 7.  Hydrophobicity and charge shape cellular metabolite concentrations.

Authors:  Arren Bar-Even; Elad Noor; Avi Flamholz; Joerg M Buescher; Ron Milo
Journal:  PLoS Comput Biol       Date:  2011-10-06       Impact factor: 4.475

8.  HMDB: the Human Metabolome Database.

Authors:  David S Wishart; Dan Tzur; Craig Knox; Roman Eisner; An Chi Guo; Nelson Young; Dean Cheng; Kevin Jewell; David Arndt; Summit Sawhney; Chris Fung; Lisa Nikolai; Mike Lewis; Marie-Aude Coutouly; Ian Forsythe; Peter Tang; Savita Shrivastava; Kevin Jeroncic; Paul Stothard; Godwin Amegbey; David Block; David D Hau; James Wagner; Jessica Miniaci; Melisa Clements; Mulu Gebremedhin; Natalie Guo; Ying Zhang; Gavin E Duggan; Glen D Macinnis; Alim M Weljie; Reza Dowlatabadi; Fiona Bamforth; Derrick Clive; Russ Greiner; Liang Li; Tom Marrie; Brian D Sykes; Hans J Vogel; Lori Querengesser
Journal:  Nucleic Acids Res       Date:  2007-01       Impact factor: 16.971

9.  Metabolic Model-Based Integration of Microbiome Taxonomic and Metabolomic Profiles Elucidates Mechanistic Links between Ecological and Metabolic Variation.

Authors:  Cecilia Noecker; Alexander Eng; Sujatha Srinivasan; Casey M Theriot; Vincent B Young; Janet K Jansson; David N Fredricks; Elhanan Borenstein
Journal:  mSystems       Date:  2016-01-19       Impact factor: 6.496

10.  Characterizing novel metabolic pathways of melatonin receptor agonist agomelatine using metabolomic approaches.

Authors:  Xing Liu; Yuan-Fu Lu; Xinfu Guan; Mingkun Zhao; Jin Wang; Feng Li
Journal:  Biochem Pharmacol       Date:  2016-03-25       Impact factor: 5.858

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  4 in total

1.  Metabolomic Profile of the Fungus Cryomyces antarcticus Under Simulated Martian and Space Conditions as Support for Life-Detection Missions on Mars.

Authors:  Federica Gevi; Patrick Leo; Alessia Cassaro; Claudia Pacelli; Jean-Pierre Paul de Vera; Elke Rabbow; Anna Maria Timperio; Silvano Onofri
Journal:  Front Microbiol       Date:  2022-05-12       Impact factor: 6.064

2.  Nitrogen Cycling and Biosignatures in a Hyperarid Mars Analog Environment.

Authors:  Jianxun Shen; Aubrey L Zerkle; Mark W Claire
Journal:  Astrobiology       Date:  2021-11-05       Impact factor: 4.335

3.  Profiling of polyphenols for in-depth understanding of Tartary buckwheat sprouts: Correlation between cultivars and active components, dynamic changes and the effects of ultraviolet B stress.

Authors:  Wei Yang; Guangtao Qian; Yiling Chen; Tingxia Liu; Huihua Wan; Sifan Wang; Xiangxiao Meng; Weiqiang Chen; Yong Su; Yiming Zhang; Wei Du; Gangqiang Dong; Pengda Ma; Krzysztof Dziedzic; Qingfu Chen; Shilin Chen; Wei Sun
Journal:  Food Chem X       Date:  2022-03-26

4.  Human metabolite detection by surface-enhanced Raman spectroscopy.

Authors:  Yao Lu; Li Lin; Jian Ye
Journal:  Mater Today Bio       Date:  2022-01-19
  4 in total

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