Literature DB >> 28054725

Mapping complementary features of cross-species structural connectivity to construct realistic "Virtual Brains".

Gleb Bezgin1,2, Ana Solodkin3, Rembrandt Bakker4,5, Petra Ritter6,7,8,9, Anthony R McIntosh1,10.   

Abstract

Modern systems neuroscience increasingly leans on large-scale multi-lab neuroinformatics initiatives to provide necessary capacity for biologically realistic modeling of primate whole-brain activity. Here, we present a framework to assemble primate brain's biologically plausible anatomical backbone for such modeling initiatives. In this framework, structural connectivity is determined by adding complementary information from invasive macaque axonal tract tracing and non-invasive human diffusion tensor imaging. Both modalities are combined by means of available interspecies registration tools and a newly developed Bayesian probabilistic modeling approach to extract common connectivity evidence. We demonstrate how this novel framework is embedded in the whole-brain simulation platform called The Virtual Brain (TVB). Hum Brain Mapp 38:2080-2093, 2017.
© 2017 Wiley Periodicals, Inc. © 2017 Wiley Periodicals, Inc.

Entities:  

Keywords:  Bayesian modeling; The Virtual Brain; cerebral cortex; connectivity; diffusion tensor imaging; neuroanatomy; primate brain; subcortex; tract tracing

Mesh:

Year:  2017        PMID: 28054725      PMCID: PMC6866819          DOI: 10.1002/hbm.23506

Source DB:  PubMed          Journal:  Hum Brain Mapp        ISSN: 1065-9471            Impact factor:   5.038


  55 in total

1.  Callosal connections of the parabelt auditory cortex in macaque monkeys.

Authors:  T A Hackett; I Stepniewska; J H Kaas
Journal:  Eur J Neurosci       Date:  1999-03       Impact factor: 3.386

2.  Non-invasive mapping of connections between human thalamus and cortex using diffusion imaging.

Authors:  T E J Behrens; H Johansen-Berg; M W Woolrich; S M Smith; C A M Wheeler-Kingshott; P A Boulby; G J Barker; E L Sillery; K Sheehan; O Ciccarelli; A J Thompson; J M Brady; P M Matthews
Journal:  Nat Neurosci       Date:  2003-07       Impact factor: 24.884

3.  Cortical parcellations of the macaque monkey analyzed on surface-based atlases.

Authors:  David C Van Essen; Matthew F Glasser; Donna L Dierker; John Harwell
Journal:  Cereb Cortex       Date:  2011-11-02       Impact factor: 5.357

Review 4.  The Rediscovery of Slowness: Exploring the Timing of Cognition.

Authors:  Morten L Kringelbach; Anthony R McIntosh; Petra Ritter; Viktor K Jirsa; Gustavo Deco
Journal:  Trends Cogn Sci       Date:  2015-10       Impact factor: 20.229

5.  Information processing architecture of functionally defined clusters in the macaque cortex.

Authors:  Kelly Shen; Gleb Bezgin; R Matthew Hutchison; Joseph S Gati; Ravi S Menon; Stefan Everling; Anthony R McIntosh
Journal:  J Neurosci       Date:  2012-11-28       Impact factor: 6.167

6.  Using the virtual brain to reveal the role of oscillations and plasticity in shaping brain's dynamical landscape.

Authors:  Dipanjan Roy; Rodrigo Sigala; Michael Breakspear; Anthony Randal McIntosh; Viktor K Jirsa; Gustavo Deco; Petra Ritter
Journal:  Brain Connect       Date:  2014-12

7.  Frontal eye field as defined by intracortical microstimulation in squirrel monkeys, owl monkeys, and macaque monkeys. II. Cortical connections.

Authors:  M F Huerta; L A Krubitzer; J H Kaas
Journal:  J Comp Neurol       Date:  1987-11-15       Impact factor: 3.215

8.  Electroencephalogram and visual evoked potential generation in a mathematical model of coupled cortical columns.

Authors:  B H Jansen; V G Rit
Journal:  Biol Cybern       Date:  1995-09       Impact factor: 2.086

9.  Effects of heartbeat and respiration on macaque fMRI: implications for functional connectivity.

Authors:  Tobias Teichert; Jack Grinband; Joy Hirsch; Vincent P Ferrera
Journal:  Neuropsychologia       Date:  2009-12-05       Impact factor: 3.139

10.  A low dimensional description of globally coupled heterogeneous neural networks of excitatory and inhibitory neurons.

Authors:  Roxana A Stefanescu; Viktor K Jirsa
Journal:  PLoS Comput Biol       Date:  2008-11-14       Impact factor: 4.475

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  6 in total

1.  Activity-dependent myelination: A glial mechanism of oscillatory self-organization in large-scale brain networks.

Authors:  Rabiya Noori; Daniel Park; John D Griffiths; Sonya Bells; Paul W Frankland; Donald Mabbott; Jeremie Lefebvre
Journal:  Proc Natl Acad Sci U S A       Date:  2020-06-01       Impact factor: 11.205

2.  A Robust Modular Automated Neuroimaging Pipeline for Model Inputs to TheVirtualBrain.

Authors:  Noah Frazier-Logue; Justin Wang; Zheng Wang; Devin Sodums; Anisha Khosla; Alexandria D Samson; Anthony R McIntosh; Kelly Shen
Journal:  Front Neuroinform       Date:  2022-06-14       Impact factor: 3.739

Review 3.  On the nature and use of models in network neuroscience.

Authors:  Danielle S Bassett; Perry Zurn; Joshua I Gold
Journal:  Nat Rev Neurosci       Date:  2018-09       Impact factor: 34.870

4.  An open resource for transdiagnostic research in pediatric mental health and learning disorders.

Authors:  Lindsay M Alexander; Jasmine Escalera; Lei Ai; Charissa Andreotti; Karina Febre; Alexander Mangone; Natan Vega-Potler; Nicolas Langer; Alexis Alexander; Meagan Kovacs; Shannon Litke; Bridget O'Hagan; Jennifer Andersen; Batya Bronstein; Anastasia Bui; Marijayne Bushey; Henry Butler; Victoria Castagna; Nicolas Camacho; Elisha Chan; Danielle Citera; Jon Clucas; Samantha Cohen; Sarah Dufek; Megan Eaves; Brian Fradera; Judith Gardner; Natalie Grant-Villegas; Gabriella Green; Camille Gregory; Emily Hart; Shana Harris; Megan Horton; Danielle Kahn; Katherine Kabotyanski; Bernard Karmel; Simon P Kelly; Kayla Kleinman; Bonhwang Koo; Eliza Kramer; Elizabeth Lennon; Catherine Lord; Ginny Mantello; Amy Margolis; Kathleen R Merikangas; Judith Milham; Giuseppe Minniti; Rebecca Neuhaus; Alexandra Levine; Yael Osman; Lucas C Parra; Ken R Pugh; Amy Racanello; Anita Restrepo; Tian Saltzman; Batya Septimus; Russell Tobe; Rachel Waltz; Anna Williams; Anna Yeo; Francisco X Castellanos; Arno Klein; Tomas Paus; Bennett L Leventhal; R Cameron Craddock; Harold S Koplewicz; Michael P Milham
Journal:  Sci Data       Date:  2017-12-19       Impact factor: 6.444

5.  A macaque connectome for large-scale network simulations in TheVirtualBrain.

Authors:  Kelly Shen; Gleb Bezgin; Michael Schirner; Petra Ritter; Stefan Everling; Anthony R McIntosh
Journal:  Sci Data       Date:  2019-07-17       Impact factor: 6.444

6.  Personalized Connectome-Based Modeling in Patients with Semi-Acute Phase TBI: Relationship to Acute Neuroimaging and 6 Month Follow-Up.

Authors:  Tyler Good; Michael Schirner; Kelly Shen; Petra Ritter; Pratik Mukherjee; Brian Levine; Anthony Randal McIntosh
Journal:  eNeuro       Date:  2022-02-16
  6 in total

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