Literature DB >> 30002509

On the nature and use of models in network neuroscience.

Danielle S Bassett1,2,3,4, Perry Zurn5, Joshua I Gold6.   

Abstract

Network theory provides an intuitively appealing framework for studying relationships among interconnected brain mechanisms and their relevance to behaviour. As the space of its applications grows, so does the diversity of meanings of the term network model. This diversity can cause confusion, complicate efforts to assess model validity and efficacy, and hamper interdisciplinary collaboration. In this Review, we examine the field of network neuroscience, focusing on organizing principles that can help overcome these challenges. First, we describe the fundamental goals in constructing network models. Second, we review the most common forms of network models, which can be described parsimoniously along the following three primary dimensions: from data representations to first-principles theory; from biophysical realism to functional phenomenology; and from elementary descriptions to coarse-grained approximations. Third, we draw on biology, philosophy and other disciplines to establish validation principles for these models. We close with a discussion of opportunities to bridge model types and point to exciting frontiers for future pursuits.

Entities:  

Mesh:

Year:  2018        PMID: 30002509      PMCID: PMC6466618          DOI: 10.1038/s41583-018-0038-8

Source DB:  PubMed          Journal:  Nat Rev Neurosci        ISSN: 1471-003X            Impact factor:   34.870


  191 in total

1.  Functional connectivity patterns of human magnetoencephalographic recordings: a 'small-world' network?

Authors:  C J Stam
Journal:  Neurosci Lett       Date:  2004-01-23       Impact factor: 3.046

Review 2.  Neuroinformatics: the integration of shared databases and tools towards integrative neuroscience.

Authors:  Shun-Ichi Amari; Francesco Beltrame; Jan G Bjaalie; Turgay Dalkara; Erik De Schutter; Gary F Egan; Nigel H Goddard; Carmen Gonzalez; Sten Grillner; Andreas Herz; K-Peter Hoffmann; Iiro Jaaskelainen; Stephen H Koslow; Soo-Young Lee; Line Matthiessen; Perry L Miller; Fernando Mira Da Silva; Mirko Novak; Viji Ravindranath; Raphael Ritz; Ulla Ruotsalainen; Vaclav Sebestra; Shankar Subramaniam; Yiyuan Tang; Arthur W Toga; Shiro Usui; Jaap Van Pelt; Paul Verschure; David Willshaw; Andrzej Wrobel
Journal:  J Integr Neurosci       Date:  2002-12       Impact factor: 2.117

3.  Predicting human resting-state functional connectivity from structural connectivity.

Authors:  C J Honey; O Sporns; L Cammoun; X Gigandet; J P Thiran; R Meuli; P Hagmann
Journal:  Proc Natl Acad Sci U S A       Date:  2009-02-02       Impact factor: 11.205

4.  Controllability of complex networks.

Authors:  Yang-Yu Liu; Jean-Jacques Slotine; Albert-László Barabási
Journal:  Nature       Date:  2011-05-12       Impact factor: 49.962

5.  Structural degree predicts functional network connectivity: a multimodal resting-state fMRI and MEG study.

Authors:  P Tewarie; A Hillebrand; E van Dellen; M M Schoonheim; F Barkhof; C H Polman; C Beaulieu; G Gong; B W van Dijk; C J Stam
Journal:  Neuroimage       Date:  2014-04-23       Impact factor: 6.556

6.  Effects of distance-dependent delay on small-world neuronal networks.

Authors:  Jinjie Zhu; Zhen Chen; Xianbin Liu
Journal:  Phys Rev E       Date:  2016-04-28       Impact factor: 2.529

7.  Presurgical thalamic "hubness" predicts surgical outcome in temporal lobe epilepsy.

Authors:  Xiaosong He; Gaelle E Doucet; Dorian Pustina; Michael R Sperling; Ashwini D Sharan; Joseph I Tracy
Journal:  Neurology       Date:  2017-05-17       Impact factor: 9.910

8.  Controllability of structural brain networks.

Authors:  Shi Gu; Fabio Pasqualetti; Matthew Cieslak; Qawi K Telesford; Alfred B Yu; Ari E Kahn; John D Medaglia; Jean M Vettel; Michael B Miller; Scott T Grafton; Danielle S Bassett
Journal:  Nat Commun       Date:  2015-10-01       Impact factor: 14.919

Review 9.  Multi-scale brain networks.

Authors:  Richard F Betzel; Danielle S Bassett
Journal:  Neuroimage       Date:  2016-11-11       Impact factor: 6.556

10.  Parcellating cortical functional networks in individuals.

Authors:  Danhong Wang; Randy L Buckner; Michael D Fox; Daphne J Holt; Avram J Holmes; Sophia Stoecklein; Georg Langs; Ruiqi Pan; Tianyi Qian; Kuncheng Li; Justin T Baker; Steven M Stufflebeam; Kai Wang; Xiaomin Wang; Bo Hong; Hesheng Liu
Journal:  Nat Neurosci       Date:  2015-11-09       Impact factor: 24.884

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  71 in total

1.  Graphery: interactive tutorials for biological network algorithms.

Authors:  Heyuan Zeng; Jinbiao Zhang; Gabriel A Preising; Tobias Rubel; Pramesh Singh; Anna Ritz
Journal:  Nucleic Acids Res       Date:  2021-07-02       Impact factor: 16.971

2.  Patterns and networks of language control in bilingual language production.

Authors:  Qiming Yuan; Junjie Wu; Man Zhang; Zhaoqi Zhang; Mo Chen; Guosheng Ding; Chunming Lu; Taomei Guo
Journal:  Brain Struct Funct       Date:  2021-01-27       Impact factor: 3.270

Review 3.  Emerging roles of network analysis for epilepsy.

Authors:  William Stacey; Mark Kramer; Kristin Gunnarsdottir; Jorge Gonzalez-Martinez; Kareem Zaghloul; Sara Inati; Sridevi Sarma; Jennifer Stiso; Ankit N Khambhati; Danielle S Bassett; Rachel J Smith; Virginia B Liu; Beth A Lopour; Richard Staba
Journal:  Epilepsy Res       Date:  2019-12-09       Impact factor: 3.045

4.  Abnormal cortical regions and subsystems in whole brain functional connectivity of mild cognitive impairment and Alzheimer's disease: a preliminary study.

Authors:  Bo Chen
Journal:  Aging Clin Exp Res       Date:  2020-04-10       Impact factor: 3.636

5.  Revisiting 'brain modes' in a new computational era: approaches for the characterization of brain-behavioural associations.

Authors:  Monica N Toba; Olivier Godefroy; R Jarrett Rushmore; Melissa Zavaglia; Redwan Maatoug; Claus C Hilgetag; Antoni Valero-Cabré
Journal:  Brain       Date:  2020-04-01       Impact factor: 13.501

6.  Graph theory for EEG: can we learn to trust another black box?

Authors:  Garnett C Smith; William C Stacey
Journal:  Brain       Date:  2019-12-01       Impact factor: 13.501

7.  Training deep neural density estimators to identify mechanistic models of neural dynamics.

Authors:  Pedro J Gonçalves; Jan-Matthis Lueckmann; Michael Deistler; Marcel Nonnenmacher; Kaan Öcal; Giacomo Bassetto; Chaitanya Chintaluri; William F Podlaski; Sara A Haddad; Tim P Vogels; David S Greenberg; Jakob H Macke
Journal:  Elife       Date:  2020-09-17       Impact factor: 8.140

8.  Virtual resection predicts surgical outcome for drug-resistant epilepsy.

Authors:  Lohith G Kini; John M Bernabei; Fadi Mikhail; Peter Hadar; Preya Shah; Ankit N Khambhati; Kelly Oechsel; Ryan Archer; Jacqueline Boccanfuso; Erin Conrad; Russell T Shinohara; Joel M Stein; Sandhitsu Das; Ammar Kheder; Timothy H Lucas; Kathryn A Davis; Danielle S Bassett; Brian Litt
Journal:  Brain       Date:  2019-12-01       Impact factor: 13.501

9.  White-matter hyperintensities in patients with carotid artery stenosis: An exploratory connectometry study.

Authors:  Michele Porcu; Roberto Sanfilippo; Roberto Montisci; Antonella Balestrieri; Jasjit S Suri; Max Wintermark; Luca Saba
Journal:  Neuroradiol J       Date:  2020-09-21

Review 10.  Personalizing neuromodulation.

Authors:  John D Medaglia; Brian Erickson; Jared Zimmerman; Apoorva Kelkar
Journal:  Int J Psychophysiol       Date:  2019-01-24       Impact factor: 2.997

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