Literature DB >> 28049858

High-Throughput Phenotyping of Maize Leaf Physiological and Biochemical Traits Using Hyperspectral Reflectance.

Craig R Yendrek1,2,3,4, Tiago Tomaz1,2,3,4, Christopher M Montes1,2,3,4, Youyuan Cao1,2,3,4, Alison M Morse1,2,3,4, Patrick J Brown1,2,3,4, Lauren M McIntyre1,2,3,4, Andrew D B Leakey1,2,3,4, Elizabeth A Ainsworth5,6,7,8.   

Abstract

High-throughput, noninvasive field phenotyping has revealed genetic variation in crop morphological, developmental, and agronomic traits, but rapid measurements of the underlying physiological and biochemical traits are needed to fully understand genetic variation in plant-environment interactions. This study tested the application of leaf hyperspectral reflectance (λ = 500-2,400 nm) as a high-throughput phenotyping approach for rapid and accurate assessment of leaf photosynthetic and biochemical traits in maize (Zea mays). Leaf traits were measured with standard wet-laboratory and gas-exchange approaches alongside measurements of leaf reflectance. Partial least-squares regression was used to develop a measure of leaf chlorophyll content, nitrogen content, sucrose content, specific leaf area, maximum rate of phosphoenolpyruvate carboxylation, [CO2]-saturated rate of photosynthesis, and leaf oxygen radical absorbance capacity from leaf reflectance spectra. Partial least-squares regression models accurately predicted five out of seven traits and were more accurate than previously used simple spectral indices for leaf chlorophyll, nitrogen content, and specific leaf area. Correlations among leaf traits and statistical inferences about differences among genotypes and treatments were similar for measured and modeled data. The hyperspectral reflectance approach to phenotyping was dramatically faster than traditional measurements, enabling over 1,000 rows to be phenotyped during midday hours over just 2 to 4 d, and offers a nondestructive method to accurately assess physiological and biochemical trait responses to environmental stress.
© 2017 American Society of Plant Biologists. All Rights Reserved.

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Year:  2016        PMID: 28049858      PMCID: PMC5210743          DOI: 10.1104/pp.16.01447

Source DB:  PubMed          Journal:  Plant Physiol        ISSN: 0032-0889            Impact factor:   8.005


  37 in total

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Authors:  Kelly M Gillespie; June M Chae; Elizabeth A Ainsworth
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3.  Using leaf optical properties to detect ozone effects on foliar biochemistry.

Authors:  Elizabeth A Ainsworth; Shawn P Serbin; Jeffrey A Skoneczka; Philip A Townsend
Journal:  Photosynth Res       Date:  2013-05-09       Impact factor: 3.573

4.  Plant phenomics and the need for physiological phenotyping across scales to narrow the genotype-to-phenotype knowledge gap.

Authors:  Dominik K Großkinsky; Jesper Svensgaard; Svend Christensen; Thomas Roitsch
Journal:  J Exp Bot       Date:  2015-07-10       Impact factor: 6.992

5.  Greater antioxidant and respiratory metabolism in field-grown soybean exposed to elevated O3 under both ambient and elevated CO2.

Authors:  Kelly M Gillespie; Fangxiu Xu; Katherine T Richter; Justin M McGrath; R J Cody Markelz; Donald R Ort; Andrew D B Leakey; Elizabeth A Ainsworth
Journal:  Plant Cell Environ       Date:  2011-10-13       Impact factor: 7.228

6.  New vegetation indices for remote measurement of chlorophylls based on leaf directional reflectance spectra.

Authors:  A Maccioni; G Agati; P Mazzinghi
Journal:  J Photochem Photobiol B       Date:  2001-08-15       Impact factor: 6.252

7.  Enzymic assay of 10 to 10 moles of sucrose in plant tissues.

Authors:  M G Jones; W H Outlaw; O H Lowry
Journal:  Plant Physiol       Date:  1977-09       Impact factor: 8.340

8.  A Novel Gene, OZONE-RESPONSIVE APOPLASTIC PROTEIN1, Enhances Cell Death in Ozone Stress in Rice.

Authors:  Yoshiaki Ueda; Shahid Siddique; Michael Frei
Journal:  Plant Physiol       Date:  2015-07-28       Impact factor: 8.340

9.  Next generation of elevated [CO2] experiments with crops: a critical investment for feeding the future world.

Authors:  Elizabeth A Ainsworth; Claus Beier; Carlo Calfapietra; Reinhart Ceulemans; Mylene Durand-Tardif; Graham D Farquhar; Douglas L Godbold; George R Hendrey; Thomas Hickler; Jörg Kaduk; David F Karnosky; Bruce A Kimball; Christian Körner; Maarten Koornneef; Tanguy Lafarge; Andrew D B Leakey; Keith F Lewin; Stephen P Long; Remy Manderscheid; David L McNeil; Timothy A Mies; Franco Miglietta; Jack A Morgan; John Nagy; Richard J Norby; Robert M Norton; Kevin E Percy; Alistair Rogers; Jean-Francois Soussana; Mark Stitt; Hans-Joachim Weigel; Jeffrey W White
Journal:  Plant Cell Environ       Date:  2008-06-03       Impact factor: 7.228

10.  Genotypic variation in tolerance to elevated ozone in rice: dissection of distinct genetic factors linked to tolerance mechanisms.

Authors:  Michael Frei; Juan Pariasca Tanaka; Matthias Wissuwa
Journal:  J Exp Bot       Date:  2008-09-05       Impact factor: 6.992

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  48 in total

1.  Conventional and hyperspectral time-series imaging of maize lines widely used in field trials.

Authors:  Zhikai Liang; Piyush Pandey; Vincent Stoerger; Yuhang Xu; Yumou Qiu; Yufeng Ge; James C Schnable
Journal:  Gigascience       Date:  2018-02-01       Impact factor: 6.524

2.  Spectral Phenotyping of Physiological and Anatomical Leaf Traits Related with Maize Water Status.

Authors:  Lorenzo Cotrozzi; Raquel Peron; Mitchell R Tuinstra; Michael V Mickelbart; John J Couture
Journal:  Plant Physiol       Date:  2020-09-09       Impact factor: 8.340

3.  Can we harness digital technologies and physiology to hasten genetic gain in US maize breeding?

Authors:  Christine H Diepenbrock; Tom Tang; Michael Jines; Frank Technow; Sara Lira; Dean Podlich; Mark Cooper; Carlos Messina
Journal:  Plant Physiol       Date:  2022-02-04       Impact factor: 8.340

4.  Selecting informative bands for partial least squares regressions improves their goodness-of-fits to estimate leaf photosynthetic parameters from hyperspectral data.

Authors:  Jia Jin; Quan Wang; Guangman Song
Journal:  Photosynth Res       Date:  2021-09-07       Impact factor: 3.573

5.  Variation in leaf transcriptome responses to elevated ozone corresponds with physiological sensitivity to ozone across maize inbred lines.

Authors:  Adalena V Nanni; Alison M Morse; Jeremy R B Newman; Nicole E Choquette; Jessica M Wedow; Zihao Liu; Andrew D B Leakey; Ana Conesa; Elizabeth A Ainsworth; Lauren M McIntyre
Journal:  Genetics       Date:  2022-07-30       Impact factor: 4.402

6.  High-throughput characterization, correlation, and mapping of leaf photosynthetic and functional traits in the soybean (Glycine max) nested association mapping population.

Authors:  Christopher M Montes; Carolyn Fox; Álvaro Sanz-Sáez; Shawn P Serbin; Etsushi Kumagai; Matheus D Krause; Alencar Xavier; James E Specht; William D Beavis; Carl J Bernacchi; Brian W Diers; Elizabeth A Ainsworth
Journal:  Genetics       Date:  2022-05-31       Impact factor: 4.402

7.  Bottlenecks and opportunities in field-based high-throughput phenotyping for heat and drought stress.

Authors:  Nathan T Hein; Ignacio A Ciampitti; S V Krishna Jagadish
Journal:  J Exp Bot       Date:  2021-07-10       Impact factor: 6.992

8.  Uncovering hidden genetic variation in photosynthesis of field-grown maize under ozone pollution.

Authors:  Nicole E Choquette; Funda Ogut; Timothy M Wertin; Christopher M Montes; Crystal A Sorgini; Alison M Morse; Patrick J Brown; Andrew D B Leakey; Lauren M McIntyre; Elizabeth A Ainsworth
Journal:  Glob Chang Biol       Date:  2019-10-01       Impact factor: 13.211

Review 9.  Advances in field-based high-throughput photosynthetic phenotyping.

Authors:  Peng Fu; Christopher M Montes; Matthew H Siebers; Nuria Gomez-Casanovas; Justin M McGrath; Elizabeth A Ainsworth; Carl J Bernacchi
Journal:  J Exp Bot       Date:  2022-05-23       Impact factor: 7.298

Review 10.  Hyperspectral reflectance-based phenotyping for quantitative genetics in crops: Progress and challenges.

Authors:  Marcin Grzybowski; Nuwan K Wijewardane; Abbas Atefi; Yufeng Ge; James C Schnable
Journal:  Plant Commun       Date:  2021-05-27
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