Literature DB >> 20495582

Signalling ballet in space and time.

Boris N Kholodenko1, John F Hancock, Walter Kolch.   

Abstract

Although we have amassed extensive catalogues of signalling network components, our understanding of the spatiotemporal control of emergent network structures has lagged behind. Dynamic behaviour is starting to be explored throughout the genome, but analysis of spatial behaviours is still confined to individual proteins. The challenge is to reveal how cells integrate temporal and spatial information to determine specific biological functions. Key findings are the discovery of molecular signalling machines such as Ras nanoclusters, spatial activity gradients and flexible network circuitries that involve transcriptional feedback. They reveal design principles of spatiotemporal organization that are crucial for network function and cell fate decisions.

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Year:  2010        PMID: 20495582      PMCID: PMC2977972          DOI: 10.1038/nrm2901

Source DB:  PubMed          Journal:  Nat Rev Mol Cell Biol        ISSN: 1471-0072            Impact factor:   94.444


  113 in total

1.  Spatial regulation of Fus3 MAP kinase activity through a reaction-diffusion mechanism in yeast pheromone signalling.

Authors:  Celine I Maeder; Mark A Hink; Ali Kinkhabwala; Reinhard Mayr; Philippe I H Bastiaens; Michael Knop
Journal:  Nat Cell Biol       Date:  2007-10-21       Impact factor: 28.824

2.  Wave-pinning and cell polarity from a bistable reaction-diffusion system.

Authors:  Yoichiro Mori; Alexandra Jilkine; Leah Edelstein-Keshet
Journal:  Biophys J       Date:  2008-01-22       Impact factor: 4.033

3.  Sustained activation of the mitogen-activated protein kinase pathway. A mechanism underlying receptor tyrosine kinase specificity for matrix metalloproteinase-9 induction and cell migration.

Authors:  L J McCawley; S Li; E V Wattenberg; L G Hudson
Journal:  J Biol Chem       Date:  1999-02-12       Impact factor: 5.157

4.  The biochemical basis of an all-or-none cell fate switch in Xenopus oocytes.

Authors:  J E Ferrell; E M Machleder
Journal:  Science       Date:  1998-05-08       Impact factor: 47.728

5.  Galectin-1 is a novel structural component and a major regulator of h-ras nanoclusters.

Authors:  Liron Belanis; Sarah J Plowman; Barak Rotblat; John F Hancock; Yoel Kloog
Journal:  Mol Biol Cell       Date:  2008-01-30       Impact factor: 4.138

6.  Plasma membrane nanoswitches generate high-fidelity Ras signal transduction.

Authors:  Tianhai Tian; Angus Harding; Kerry Inder; Sarah Plowman; Robert G Parton; John F Hancock
Journal:  Nat Cell Biol       Date:  2007-07-08       Impact factor: 28.824

7.  Bistability and oscillations in the Huang-Ferrell model of MAPK signaling.

Authors:  Liang Qiao; Robert B Nachbar; Ioannis G Kevrekidis; Stanislav Y Shvartsman
Journal:  PLoS Comput Biol       Date:  2007-08-06       Impact factor: 4.475

8.  Ligand-dependent responses of the ErbB signaling network: experimental and modeling analyses.

Authors:  Marc R Birtwistle; Mariko Hatakeyama; Noriko Yumoto; Babatunde A Ogunnaike; Jan B Hoek; Boris N Kholodenko
Journal:  Mol Syst Biol       Date:  2007-11-13       Impact factor: 11.429

9.  GPI-anchored receptor clusters transiently recruit Lyn and G alpha for temporary cluster immobilization and Lyn activation: single-molecule tracking study 1.

Authors:  Kenichi G N Suzuki; Takahiro K Fujiwara; Fumiyuki Sanematsu; Ryota Iino; Michael Edidin; Akihiro Kusumi
Journal:  J Cell Biol       Date:  2007-05-21       Impact factor: 10.539

10.  Dynamic recruitment of phospholipase C gamma at transiently immobilized GPI-anchored receptor clusters induces IP3-Ca2+ signaling: single-molecule tracking study 2.

Authors:  Kenichi G N Suzuki; Takahiro K Fujiwara; Michael Edidin; Akihiro Kusumi
Journal:  J Cell Biol       Date:  2007-05-21       Impact factor: 10.539

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  254 in total

Review 1.  Mathematical simulation of membrane protein clustering for efficient signal transduction.

Authors:  Krishnan Radhakrishnan; Ádám Halász; Meghan M McCabe; Jeremy S Edwards; Bridget S Wilson
Journal:  Ann Biomed Eng       Date:  2012-06-06       Impact factor: 3.934

2.  Emerging in vivo analyses of cell function using fluorescence imaging (*).

Authors:  Jennifer Lippincott-Schwartz
Journal:  Annu Rev Biochem       Date:  2011       Impact factor: 23.643

3.  Regulation of oscillation dynamics in biochemical systems with dual negative feedback loops.

Authors:  Lan K Nguyen
Journal:  J R Soc Interface       Date:  2012-03-14       Impact factor: 4.118

4.  Heritability lost; intelligence found. Intelligence is integral to the adaptation and survival of all organisms faced with changing environments.

Authors:  Ken Richardson
Journal:  EMBO Rep       Date:  2012-06-29       Impact factor: 8.807

5.  Stochastic branching-diffusion models for gene expression.

Authors:  David Cottrell; Peter S Swain; Paul F Tupper
Journal:  Proc Natl Acad Sci U S A       Date:  2012-06-01       Impact factor: 11.205

Review 6.  The ERBB network: at last, cancer therapy meets systems biology.

Authors:  Yosef Yarden; Gur Pines
Journal:  Nat Rev Cancer       Date:  2012-07-12       Impact factor: 60.716

Review 7.  Spatial cycles in G-protein crowd control.

Authors:  Nachiket Vartak; Philippe Bastiaens
Journal:  EMBO J       Date:  2010-08-18       Impact factor: 11.598

8.  A quantitative approach to analyze binding diffusion kinetics by confocal FRAP.

Authors:  Minchul Kang; Charles A Day; Emmanuele DiBenedetto; Anne K Kenworthy
Journal:  Biophys J       Date:  2010-11-03       Impact factor: 4.033

9.  Targeted in vivo O-GlcNAc sensors reveal discrete compartment-specific dynamics during signal transduction.

Authors:  Luz D Carrillo; Joshua A Froemming; Lara K Mahal
Journal:  J Biol Chem       Date:  2010-12-07       Impact factor: 5.157

Review 10.  Revitalizing membrane rafts: new tools and insights.

Authors:  Kai Simons; Mathias J Gerl
Journal:  Nat Rev Mol Cell Biol       Date:  2010-10       Impact factor: 94.444

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