Literature DB >> 28002733

Single-Molecule DNA Polymerase Dynamics at a Bacterial Replisome in Live Cells.

Yi Liao1, Yilai Li1, Jeremy W Schroeder2, Lyle A Simmons3, Julie S Biteen4.   

Abstract

PolC is one of two essential replicative DNA polymerases found in the Gram-positive bacterium Bacillus subtilis. The B. subtilis replisome is eukaryotic-like in that it relies on a two DNA polymerase system for chromosomal replication. To quantitatively image how the replicative DNA polymerase PolC functions in B. subtilis, we applied photobleaching-assisted microscopy, three-dimensional superresolution imaging, and single-particle tracking to examine the in vivo behavior of PolC at single-molecule resolution. We report the stoichiometry of PolC proteins within each cell and within each replisome, we elucidate the diffusion characteristics of individual PolC molecules, and we quantify the exchange dynamics for PolC engaged in lagging strand synthesis. We show that PolC is highly dynamic: this DNA polymerase is constantly recruited to and released from a centrally located replisome, providing, to our knowledge, new insight into the organization and dynamics of the replisome in bacterial cells.
Copyright © 2016 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2016        PMID: 28002733      PMCID: PMC5192695          DOI: 10.1016/j.bpj.2016.11.006

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  38 in total

1.  Spatial and temporal organization of the Bacillus subtilis replication cycle.

Authors:  Melanie B Berkmen; Alan D Grossman
Journal:  Mol Microbiol       Date:  2006-08-30       Impact factor: 3.501

2.  A transcriptional response to replication status mediated by the conserved bacterial replication protein DnaA.

Authors:  Alexi I Goranov; Luba Katz; Adam M Breier; Christopher B Burge; Alan D Grossman
Journal:  Proc Natl Acad Sci U S A       Date:  2005-08-24       Impact factor: 11.205

3.  Escherichia coli sister chromosome separation includes an abrupt global transition with concomitant release of late-splitting intersister snaps.

Authors:  Mohan C Joshi; Aude Bourniquel; Jay Fisher; Brian T Ho; David Magnan; Nancy Kleckner; David Bates
Journal:  Proc Natl Acad Sci U S A       Date:  2011-01-31       Impact factor: 11.205

Review 4.  DNA replicases from a bacterial perspective.

Authors:  Charles S McHenry
Journal:  Annu Rev Biochem       Date:  2011       Impact factor: 23.643

5.  Single-molecule DNA repair in live bacteria.

Authors:  Stephan Uphoff; Rodrigo Reyes-Lamothe; Federico Garza de Leon; David J Sherratt; Achillefs N Kapanidis
Journal:  Proc Natl Acad Sci U S A       Date:  2013-04-29       Impact factor: 11.205

6.  The architecture of a eukaryotic replisome.

Authors:  Jingchuan Sun; Yi Shi; Roxana E Georgescu; Zuanning Yuan; Brian T Chait; Huilin Li; Michael E O'Donnell
Journal:  Nat Struct Mol Biol       Date:  2015-11-02       Impact factor: 15.369

7.  Photoactivatable mCherry for high-resolution two-color fluorescence microscopy.

Authors:  Fedor V Subach; George H Patterson; Suliana Manley; Jennifer M Gillette; Jennifer Lippincott-Schwartz; Vladislav V Verkhusha
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8.  Reconstitution of a eukaryotic replisome reveals suppression mechanisms that define leading/lagging strand operation.

Authors:  Roxana E Georgescu; Grant D Schauer; Nina Y Yao; Lance D Langston; Olga Yurieva; Dan Zhang; Jeff Finkelstein; Mike E O'Donnell
Journal:  Elife       Date:  2015-04-14       Impact factor: 8.140

9.  The DNA polymerase III holoenzyme contains γ and is not a trimeric polymerase.

Authors:  Paul R Dohrmann; Raul Correa; Ryan L Frisch; Susan M Rosenberg; Charles S McHenry
Journal:  Nucleic Acids Res       Date:  2016-01-18       Impact factor: 16.971

10.  Single-molecule imaging of transcription factor binding to DNA in live mammalian cells.

Authors:  J Christof M Gebhardt; David M Suter; Rahul Roy; Ziqing W Zhao; Alec R Chapman; Srinjan Basu; Tom Maniatis; X Sunney Xie
Journal:  Nat Methods       Date:  2013-03-24       Impact factor: 28.547

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  21 in total

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Journal:  Biophys J       Date:  2019-02-16       Impact factor: 4.033

2.  Replisome activity slowdown after exposure to ultraviolet light in Escherichia coli.

Authors:  Nicolas Soubry; Andrea Wang; Rodrigo Reyes-Lamothe
Journal:  Proc Natl Acad Sci U S A       Date:  2019-05-24       Impact factor: 11.205

3.  Single-Molecule Fluorescence Methods to Study Protein Exchange Kinetics in Supramolecular Complexes.

Authors:  Richard R Spinks; Lisanne M Spenkelink; Antoine M van Oijen
Journal:  Methods Mol Biol       Date:  2021

4.  Dynamic Exchange of Two Essential DNA Polymerases during Replication and after Fork Arrest.

Authors:  Yilai Li; Ziyuan Chen; Lindsay A Matthews; Lyle A Simmons; Julie S Biteen
Journal:  Biophys J       Date:  2019-01-11       Impact factor: 4.033

Review 5.  Guidelines for DNA recombination and repair studies: Mechanistic assays of DNA repair processes.

Authors:  Hannah L Klein; Kenny K H Ang; Michelle R Arkin; Emily C Beckwitt; Yi-Hsuan Chang; Jun Fan; Youngho Kwon; Michael J Morten; Sucheta Mukherjee; Oliver J Pambos; Hafez El Sayyed; Elizabeth S Thrall; João P Vieira-da-Rocha; Quan Wang; Shuang Wang; Hsin-Yi Yeh; Julie S Biteen; Peter Chi; Wolf-Dietrich Heyer; Achillefs N Kapanidis; Joseph J Loparo; Terence R Strick; Patrick Sung; Bennett Van Houten; Hengyao Niu; Eli Rothenberg
Journal:  Microb Cell       Date:  2019-01-07

6.  Tunability of DNA Polymerase Stability during Eukaryotic DNA Replication.

Authors:  Jacob S Lewis; Lisanne M Spenkelink; Grant D Schauer; Olga Yurieva; Stefan H Mueller; Varsha Natarajan; Gurleen Kaur; Claire Maher; Callum Kay; Michael E O'Donnell; Antoine M van Oijen
Journal:  Mol Cell       Date:  2019-11-05       Impact factor: 17.970

7.  Identification of Multiple Kinetic Populations of DNA-Binding Proteins in Live Cells.

Authors:  Han N Ho; Daniel Zalami; Jürgen Köhler; Antoine M van Oijen; Harshad Ghodke
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Review 8.  The bacterial replisome has factory-like localization.

Authors:  Sarah M Mangiameli; Julie A Cass; Houra Merrikh; Paul A Wiggins
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Review 9.  The bacterial cell cycle, chromosome inheritance and cell growth.

Authors:  Rodrigo Reyes-Lamothe; David J Sherratt
Journal:  Nat Rev Microbiol       Date:  2019-08       Impact factor: 60.633

10.  The Replisomes Remain Spatially Proximal throughout the Cell Cycle in Bacteria.

Authors:  Sarah M Mangiameli; Brian T Veit; Houra Merrikh; Paul A Wiggins
Journal:  PLoS Genet       Date:  2017-01-23       Impact factor: 5.917

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