Literature DB >> 34544605

Kinetic mechanisms for O2 binding to myoglobins and hemoglobins.

John S Olson1.   

Abstract

Antonini and Brunori's 1971 book "Hemoglobin and Myoglobin in Their Reactions with Ligands" was a truly remarkable publication that summarized almost 100 years of research on O2 binding to these globins. Over the ensuing 50 years, ultra-fast laser photolysis techniques, high-resolution and time resolved X-ray crystallography, molecular dynamics simulations, and libraries of recombinant myoglobin (Mb) and hemoglobin (Hb) variants have provided structural interpretations of O2 binding to these proteins. The resultant mechanisms provide quantitative descriptions of the stereochemical factors that govern overall affinity, including proximal and distal steric restrictions that affect iron reactivity and favorable positive electrostatic interactions that preferentially stabilize bound O2. The pathway for O2 uptake and release by Mb and subunits of Hb has been mapped by screening libraries of site-directed mutants in laser photolysis experiments. O2 enters mammalian Mb and the α and β subunits of human HbA through a channel created by upward and outward rotation of the distal His at the E7 helical position, is non-covalently captured in the interior of the distal cavity, and then internally forms a bond with the heme Fe(II) atom. O2 dissociation is governed by disruption of hydrogen bonding interactions with His (E7), breakage of the Fe(II)-O2 bond, and then competition between rebinding and escape through the E7-gate. The structural features that govern the rates of both the individual steps and overall reactions have been determined and provide the framework for: (1) defining the physiological functions of specific globins and their evolution; (2) understanding the clinical features of hemoglobinopathies; and (3) designing safer and more efficient acellular hemoglobin-based oxygen carriers (HBOCs) for transfusion therapy, organ preservation, and other commercially relevant O2 transport and storage processes.
Copyright © 2021 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Engineering globins; Geminate recombination; Hemoglobin; Ligand pathways; Myoglobin; O(2) binding kinetics; O(2) transport and storage; Transition states

Mesh:

Substances:

Year:  2021        PMID: 34544605      PMCID: PMC8821315          DOI: 10.1016/j.mam.2021.101024

Source DB:  PubMed          Journal:  Mol Aspects Med        ISSN: 0098-2997


  139 in total

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Authors:  Raymond M Esquerra; Bushra M Bibi; Pooncharas Tipgunlakant; Ivan Birukou; Jayashree Soman; John S Olson; David S Kliger; Robert A Goldbeck
Journal:  Biochemistry       Date:  2016-07-13       Impact factor: 3.162

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Authors:  M F Perutz; H Lehmann
Journal:  Nature       Date:  1968-08-31       Impact factor: 49.962

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Authors:  D A Duddell; R J Morris; J T Richards
Journal:  Biochim Biophys Acta       Date:  1980-01-24

4.  Numerical analysis of kinetic ligand binding data.

Authors:  J S Olson
Journal:  Methods Enzymol       Date:  1981       Impact factor: 1.600

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Authors:  J Hofrichter; J H Sommer; E R Henry; W A Eaton
Journal:  Proc Natl Acad Sci U S A       Date:  1983-04       Impact factor: 11.205

6.  Aggregation of deoxyhemoglobin subunits.

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Journal:  J Biol Chem       Date:  1976-12-25       Impact factor: 5.157

7.  Mechanism of NO-induced oxidation of myoglobin and hemoglobin.

Authors:  R F Eich; T Li; D D Lemon; D H Doherty; S R Curry; J F Aitken; A J Mathews; K A Johnson; R D Smith; G N Phillips; J S Olson
Journal:  Biochemistry       Date:  1996-06-04       Impact factor: 3.162

8.  Using Biosynthetic Models of Heme-Copper Oxidase and Nitric Oxide Reductase in Myoglobin to Elucidate Structural Features Responsible for Enzymatic Activities.

Authors:  Ambika Bhagi-Damodaran; Igor Petrik; Yi Lu
Journal:  Isr J Chem       Date:  2016-09-16       Impact factor: 3.333

9.  O2 and Water Migration Pathways between the Solvent and Heme Pockets of Hemoglobin with Open and Closed Conformations of the Distal HisE7.

Authors:  Maria S Shadrina; Gilles H Peslherbe; Ann M English
Journal:  Biochemistry       Date:  2015-08-19       Impact factor: 3.162

10.  The millisecond intermediate in the reaction of nitric oxide with oxymyoglobin is an iron(III)--nitrato complex, not a peroxynitrite.

Authors:  Erik T Yukl; Simon de Vries; Pierre Moënne-Loccoz
Journal:  J Am Chem Soc       Date:  2009-06-03       Impact factor: 15.419

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