Literature DB >> 17358185

Hybrid simulations of lateral diffusion in fluctuating membranes.

Ellen Reister-Gottfried1, Stefan M Leitenberger, Udo Seifert.   

Abstract

In this paper we introduce a method to simulate lateral diffusion of inclusions in a fluctuating membrane. The regarded systems are governed by two dynamic processes: the height fluctuations of the membrane and the diffusion of the inclusion along the membrane. While membrane fluctuations can be expressed in terms of a dynamic equation which follows from the Helfrich Hamiltonian, the dynamics of the diffusing particle is described by a Langevin or Smoluchowski equation. In the latter equations, the curvature of the surface needs to be accounted for, which makes particle diffusion a function of membrane fluctuations. In our scheme these coupled dynamic equations, the membrane equation and the Langevin equation for the particle, are numerically integrated to simulate diffusion in a membrane. The simulations are used to study the ratio of the diffusion coefficient projected on a flat plane and the intramembrane diffusion coefficient for the case of free diffusion. We compare our results with recent analytical results that employ a preaveraging approximation and analyze the validity of this approximation. A detailed simulation study of the relevant correlation functions reveals a surprisingly large range where the approximation is applicable.

Mesh:

Year:  2007        PMID: 17358185     DOI: 10.1103/PhysRevE.75.011908

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  11 in total

1.  Diffusion in a fluid membrane with a flexible cortical cytoskeleton.

Authors:  Thorsten Auth; Nir S Gov
Journal:  Biophys J       Date:  2009-02       Impact factor: 4.033

2.  Correlated diffusion of membrane proteins and their effect on membrane viscosity.

Authors:  Naomi Oppenheimer; Haim Diamant
Journal:  Biophys J       Date:  2009-04-22       Impact factor: 4.033

3.  Mesoscale computational studies of membrane bilayer remodeling by curvature-inducing proteins.

Authors:  N Ramakrishnan; P B Sunil Kumar; Ravi Radhakrishnan
Journal:  Phys Rep       Date:  2014-10-01       Impact factor: 25.600

4.  An implicit lipid model for efficient reaction-diffusion simulations of protein binding to surfaces of arbitrary topology.

Authors:  Yiben Fu; Osman N Yogurtcu; Ruchita Kothari; Gudrun Thorkelsdottir; Alexander J Sodt; Margaret E Johnson
Journal:  J Chem Phys       Date:  2019-09-28       Impact factor: 3.488

5.  Simple differences in the protein-membrane attachment mechanism have functional consequences for surface mechanics.

Authors:  K Sapp; L Maibaum; A J Sodt
Journal:  J Chem Phys       Date:  2019-10-28       Impact factor: 3.488

6.  Landscape of finite-temperature equilibrium behaviour of curvature-inducing proteins on a bilayer membrane explored using a linearized elastic free energy model.

Authors:  Neeraj J Agrawal; Joshua Weinstein; Ravi Radhakrishnan
Journal:  Mol Phys       Date:  2008-08-01       Impact factor: 1.962

7.  Seeing the Forest in Lieu of the Trees: Continuum Simulations of Cell Membranes at Large Length Scales.

Authors:  Kayla Sapp; Roie Shlomovitz; Lutz Maibaum
Journal:  Annu Rep Comput Chem       Date:  2014-12-04

8.  Calculation of free energies in fluid membranes subject to heterogeneous curvature fields.

Authors:  Neeraj J Agrawal; Ravi Radhakrishnan
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2009-07-30

9.  Suppressing membrane height fluctuations leads to a membrane-mediated interaction among proteins.

Authors:  Kayla Sapp; Lutz Maibaum
Journal:  Phys Rev E       Date:  2016-11-29       Impact factor: 2.529

10.  Brownian Translational Dynamics on a Flexible Surface: Nuclear Spin Relaxation of Fluid Membrane Phases.

Authors:  Pär Håkansson; Tom Boirin; Juha Vaara
Journal:  Langmuir       Date:  2018-03-14       Impact factor: 3.882

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