Literature DB >> 33169126

Bacterial terpenome.

Jeffrey D Rudolf1, Tyler A Alsup1, Baofu Xu1, Zining Li1.   

Abstract

Covering: up to mid-2020 Terpenoids, also called isoprenoids, are the largest and most structurally diverse family of natural products. Found in all domains of life, there are over 80 000 known compounds. The majority of characterized terpenoids, which include some of the most well known, pharmaceutically relevant, and commercially valuable natural products, are produced by plants and fungi. Comparatively, terpenoids of bacterial origin are rare. This is counter-intuitive to the fact that recent microbial genomics revealed that almost all bacteria have the biosynthetic potential to create the C5 building blocks necessary for terpenoid biosynthesis. In this review, we catalogue terpenoids produced by bacteria. We collected 1062 natural products, consisting of both primary and secondary metabolites, and classified them into two major families and 55 distinct subfamilies. To highlight the structural and chemical space of bacterial terpenoids, we discuss their structures, biosynthesis, and biological activities. Although the bacterial terpenome is relatively small, it presents a fascinating dichotomy for future research. Similarities between bacterial and non-bacterial terpenoids and their biosynthetic pathways provides alternative model systems for detailed characterization while the abundance of novel skeletons, biosynthetic pathways, and bioactivies presents new opportunities for drug discovery, genome mining, and enzymology.

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Year:  2021        PMID: 33169126      PMCID: PMC8107197          DOI: 10.1039/d0np00066c

Source DB:  PubMed          Journal:  Nat Prod Rep        ISSN: 0265-0568            Impact factor:   15.111


  754 in total

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Journal:  J Antibiot (Tokyo)       Date:  2010-07-07       Impact factor: 2.649

2.  A80915, a new antibiotic complex produced by Streptomyces aculeolatus. Discovery, taxonomy, fermentation, isolation, characterization, and antibacterial evaluation.

Authors:  D S Fukuda; J S Mynderse; P J Baker; D M Berry; L D Boeck; R C Yao; F P Mertz; W M Nakatsukasa; J Mabe; J Ott
Journal:  J Antibiot (Tokyo)       Date:  1990-06       Impact factor: 2.649

Review 3.  Protein kinase C: perfectly balanced.

Authors:  Alexandra C Newton
Journal:  Crit Rev Biochem Mol Biol       Date:  2018-04       Impact factor: 8.250

4.  Volatile organic compounds from arctic bacteria of the Cytophaga-Flavobacterium-Bacteroides group: a retrobiosynthetic approach in chemotaxonomic investigations.

Authors:  Jeroen S Dickschat; Elisabeth Helmke; Stefan Schulz
Journal:  Chem Biodivers       Date:  2005-03       Impact factor: 2.408

5.  Biosynthesis of a natural polyketide-isoprenoid hybrid compound, furaquinocin A: identification and heterologous expression of the gene cluster.

Authors:  Takashi Kawasaki; Yutaka Hayashi; Tomohisa Kuzuyama; Kazuo Furihata; Nobuya Itoh; Haruo Seto; Tohru Dairi
Journal:  J Bacteriol       Date:  2006-02       Impact factor: 3.490

6.  The aurachins, new quinoline antibiotics from myxobacteria: production, physico-chemical and biological properties.

Authors:  B Kunze; G Höfle; H Reichenbach
Journal:  J Antibiot (Tokyo)       Date:  1987-03       Impact factor: 2.649

7.  Myxol and 4-ketomyxol 2'-fucosides, not rhamnosides, from Anabaena sp. PCC 7120 and Nostoc punctiforme PCC 73102, and proposal for the biosynthetic pathway of carotenoids.

Authors:  Shinichi Takaichi; Mari Mochimaru; Takashi Maoka; Hiroshi Katoh
Journal:  Plant Cell Physiol       Date:  2005-02-02       Impact factor: 4.927

8.  Methylpendolmycin, an indolactam from a Nocardiopsis sp.

Authors:  H H Sun; C B White; J Dedinas; R Cooper; D M Sedlock
Journal:  J Nat Prod       Date:  1991 Sep-Oct       Impact factor: 4.050

9.  Isolation, structure and biological activities of platensimycin B4 from Streptomyces platensis.

Authors:  Chaowei Zhang; John Ondeyka; Ziqiang Guan; Lisa Dietrich; Bruce Burgess; Jun Wang; Sheo B Singh
Journal:  J Antibiot (Tokyo)       Date:  2009-11-13       Impact factor: 2.649

10.  Cyclization of squalene from both termini: identification of an onoceroid synthase and enzymatic synthesis of ambrein.

Authors:  Daijiro Ueda; Tsutomu Hoshino; Tsutomu Sato
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  10 in total

1.  Bacterial diterpene synthases prenylate small molecules.

Authors:  Baofu Xu; Zining Li; Tyler A Alsup; Michelle A Ehrenberger; Jeffrey D Rudolf
Journal:  ACS Catal       Date:  2021-04-29       Impact factor: 13.084

2.  Mechanistic Insights into the Formation of the 6,10-Bicyclic Eunicellane Skeleton by the Bacterial Diterpene Synthase Bnd4.

Authors:  Baofu Xu; Dean J Tantillo; Jeffrey D Rudolf
Journal:  Angew Chem Int Ed Engl       Date:  2021-09-20       Impact factor: 16.823

3.  Identification and Characterization of Bifunctional Drimenol Synthases of Marine Bacterial Origin.

Authors:  Nhu Ngoc Quynh Vo; Yuhta Nomura; Kiyomi Kinugasa; Hiroshi Takagi; Shunji Takahashi
Journal:  ACS Chem Biol       Date:  2022-04-21       Impact factor: 4.634

4.  Untargeted Metabolomics Approach of Cross-Adaptation in Salmonella Enterica Induced by Major Compounds of Essential Oils.

Authors:  Jorge Pamplona Pagnossa; Gabriele Rocchetti; Jadson Diogo Pereira Bezerra; Gaber El-Saber Batiha; Eman A El-Masry; Mohamed H Mahmoud; Abdulrahman A Alsayegh; Abdullah Mashraqi; Pier Sandro Cocconcelli; Cledir Santos; Luigi Lucini; Roberta Hilsdorf Piccoli
Journal:  Front Microbiol       Date:  2022-05-25       Impact factor: 6.064

5.  Discovery and Biosynthesis of a Structurally Dynamic Antibacterial Diterpenoid.

Authors:  Chenxi Zhu; Baofu Xu; Donovon A Adpressa; Jeffrey D Rudolf; Sandra Loesgen
Journal:  Angew Chem Int Ed Engl       Date:  2021-05-14       Impact factor: 16.823

6.  The Natural Products Atlas 2.0: a database of microbially-derived natural products.

Authors:  Jeffrey A van Santen; Ella F Poynton; Dasha Iskakova; Emily McMann; Tyler A Alsup; Trevor N Clark; Claire H Fergusson; David P Fewer; Alison H Hughes; Caitlin A McCadden; Jonathan Parra; Sylvia Soldatou; Jeffrey D Rudolf; Elisabeth M-L Janssen; Katherine R Duncan; Roger G Linington
Journal:  Nucleic Acids Res       Date:  2022-01-07       Impact factor: 16.971

7.  Identification of the new prenyltransferase Ubi-297 from marine bacteria and elucidation of its substrate specificity.

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8.  Efficient production of clerodane and ent-kaurane diterpenes through truncated artificial pathways in Escherichia coli.

Authors:  Fang-Ru Li; Xiaoxu Lin; Qian Yang; Ning-Hua Tan; Liao-Bin Dong
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9.  Crystal Structure Based Mutagenesis of Cattleyene Synthase Leads to the Generation of Rearranged Polycyclic Diterpenes.

Authors:  Baiying Xing; Houchao Xu; Annan Li; Tingting Lou; Meng Xu; Kaibiao Wang; Zhengren Xu; Jeroen S Dickschat; Donghui Yang; Ming Ma
Journal:  Angew Chem Int Ed Engl       Date:  2022-08-01       Impact factor: 16.823

Review 10.  Diterpenes Specially Produced by Fungi: Structures, Biological Activities, and Biosynthesis (2010-2020).

Authors:  Fa-Lei Zhang; Tao Feng
Journal:  J Fungi (Basel)       Date:  2022-02-28
  10 in total

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