Literature DB >> 27960262

Chemical Glycoproteomics.

Krishnan K Palaniappan1, Carolyn R Bertozzi.   

Abstract

Chemical tools have accelerated progress in glycoscience, reducing experimental barriers to studying protein glycosylation, the most widespread and complex form of posttranslational modification. For example, chemical glycoproteomics technologies have enabled the identification of specific glycosylation sites and glycan structures that modulate protein function in a number of biological processes. This field is now entering a stage of logarithmic growth, during which chemical innovations combined with mass spectrometry advances could make it possible to fully characterize the human glycoproteome. In this review, we describe the important role that chemical glycoproteomics methods are playing in such efforts. We summarize developments in four key areas: enrichment of glycoproteins and glycopeptides from complex mixtures, emphasizing methods that exploit unique chemical properties of glycans or introduce unnatural functional groups through metabolic labeling and chemoenzymatic tagging; identification of sites of protein glycosylation; targeted glycoproteomics; and functional glycoproteomics, with a focus on probing interactions between glycoproteins and glycan-binding proteins. Our goal with this survey is to provide a foundation on which continued technological advancements can be made to promote further explorations of protein glycosylation.

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Year:  2016        PMID: 27960262      PMCID: PMC5327817          DOI: 10.1021/acs.chemrev.6b00023

Source DB:  PubMed          Journal:  Chem Rev        ISSN: 0009-2665            Impact factor:   60.622


  402 in total

1.  Glycoprotein identification and localization of O-glycosylation sites by mass spectrometric analysis of deglycosylated/alkylaminylated peptide fragments.

Authors:  F G Hanisch; M Jovanovic; J Peter-Katalinic
Journal:  Anal Biochem       Date:  2001-03-01       Impact factor: 3.365

2.  Lectin affinity capture, isotope-coded tagging and mass spectrometry to identify N-linked glycoproteins.

Authors:  Hiroyuki Kaji; Haruna Saito; Yoshio Yamauchi; Takashi Shinkawa; Masato Taoka; Jun Hirabayashi; Ken-ichi Kasai; Nobuhiro Takahashi; Toshiaki Isobe
Journal:  Nat Biotechnol       Date:  2003-05-18       Impact factor: 54.908

3.  Supplemental activation method for high-efficiency electron-transfer dissociation of doubly protonated peptide precursors.

Authors:  Danielle L Swaney; Graeme C McAlister; Matthew Wirtala; Jae C Schwartz; John E P Syka; Joshua J Coon
Journal:  Anal Chem       Date:  2007-01-15       Impact factor: 6.986

4.  Beta-N-acetylglucosamine (O-GlcNAc) is part of the histone code.

Authors:  Kaoru Sakabe; Zihao Wang; Gerald W Hart
Journal:  Proc Natl Acad Sci U S A       Date:  2010-11-02       Impact factor: 11.205

Review 5.  Chemical approaches to glycobiology.

Authors:  Laura L Kiessling; Rebecca A Splain
Journal:  Annu Rev Biochem       Date:  2010       Impact factor: 23.643

6.  Structure determination of O-linked glycopeptides by tandem mass spectrometry.

Authors:  K F Medzihradszky; B L Gillece-Castro; C A Settineri; R R Townsend; F R Masiarz; A L Burlingame
Journal:  Biomed Environ Mass Spectrom       Date:  1990-12-05

7.  Amine Chemistry Method for Selective Enrichment of N-Linked Glycopeptides for Glycoproteomics Analysis.

Authors:  Zhang Zhang; Deguang Sun; Yuting Cong; Jiawei Mao; Junfeng Huang; Hongqiang Qin; Jing Liu; Guang Huang; Liming Wang; Mingliang Ye; Hanfa Zou
Journal:  J Proteome Res       Date:  2015-08-17       Impact factor: 4.466

8.  Elucidation of O-glycosylation structures of the beta-amyloid precursor protein by liquid chromatography-mass spectrometry using electron transfer dissociation and collision induced dissociation.

Authors:  Irina Perdivara; Robert Petrovich; Bernadette Allinquant; Bernadette Alliquant; Leesa J Deterding; Kenneth B Tomer; Michael Przybylski
Journal:  J Proteome Res       Date:  2009-02       Impact factor: 4.466

9.  Proteome-wide post-translational modification statistics: frequency analysis and curation of the swiss-prot database.

Authors:  George A Khoury; Richard C Baliban; Christodoulos A Floudas
Journal:  Sci Rep       Date:  2011-09-13       Impact factor: 4.379

10.  Changes in metabolic chemical reporter structure yield a selective probe of O-GlcNAc modification.

Authors:  Kelly N Chuh; Balyn W Zaro; Friedrich Piller; Véronique Piller; Matthew R Pratt
Journal:  J Am Chem Soc       Date:  2014-08-25       Impact factor: 15.419

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  52 in total

1.  Fitness Factors for Bioorthogonal Chemical Probes.

Authors:  Yulin Tian; Qing Lin
Journal:  ACS Chem Biol       Date:  2019-12-05       Impact factor: 5.100

2.  LC-MS/MS characterization of xyloside-primed glycosaminoglycans with cytotoxic properties reveals structural diversity and novel glycan modifications.

Authors:  Andrea Persson; Alejandro Gomez Toledo; Egor Vorontsov; Waqas Nasir; Daniel Willén; Fredrik Noborn; Ulf Ellervik; Katrin Mani; Jonas Nilsson; Göran Larson
Journal:  J Biol Chem       Date:  2018-05-08       Impact factor: 5.157

3.  Methods for the Detection, Study, and Dynamic Profiling of O-GlcNAc Glycosylation.

Authors:  John W Thompson; Matthew E Griffin; Linda C Hsieh-Wilson
Journal:  Methods Enzymol       Date:  2017-08-07       Impact factor: 1.600

Review 4.  Synthetic glycoscapes: addressing the structural and functional complexity of the glycocalyx.

Authors:  Sean C Purcell; Kamil Godula
Journal:  Interface Focus       Date:  2019-02-15       Impact factor: 3.906

5.  Lactosyl-sepharose binding proteins from pancreatic cancer cells show differential expression in primary and metastatic organs.

Authors:  Micah N Sagini; Karel D Klika; Agnes Hotz-Wagenblatt; Michael Zepp; Martin R Berger
Journal:  Exp Biol Med (Maywood)       Date:  2020-03-04

6.  Comprehensive structural glycomic characterization of the glycocalyxes of cells and tissues.

Authors:  Qiongyu Li; Yixuan Xie; Maurice Wong; Mariana Barboza; Carlito B Lebrilla
Journal:  Nat Protoc       Date:  2020-07-17       Impact factor: 13.491

Review 7.  Global and site-specific analysis of protein glycosylation in complex biological systems with Mass Spectrometry.

Authors:  Haopeng Xiao; Fangxu Sun; Suttipong Suttapitugsakul; Ronghu Wu
Journal:  Mass Spectrom Rev       Date:  2019-01-03       Impact factor: 10.946

Review 8.  Mass Spectrometry Approaches to Glycomic and Glycoproteomic Analyses.

Authors:  L Renee Ruhaak; Gege Xu; Qiongyu Li; Elisha Goonatilleke; Carlito B Lebrilla
Journal:  Chem Rev       Date:  2018-03-19       Impact factor: 60.622

9.  Mass spectrometric analysis of the N-glycoproteome in statin-treated liver cells with two lectin-independent chemical enrichment methods.

Authors:  Haopeng Xiao; Ju Eun Hwang; Ronghu Wu
Journal:  Int J Mass Spectrom       Date:  2017-05-27       Impact factor: 1.986

10.  The O-GlcNAc Modification on Kinases.

Authors:  Paul A Schwein; Christina M Woo
Journal:  ACS Chem Biol       Date:  2020-03-10       Impact factor: 5.100

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