Literature DB >> 31769957

Fitness Factors for Bioorthogonal Chemical Probes.

Yulin Tian1, Qing Lin1.   

Abstract

Bioorthogonal chemistry has offered an invaluable reactivity-based tool to chemical biology owing to its exquisite specificity in tagging a diverse set of biomolecules in their native environment. Despite tremendous progress in the field over the past decade, designing a suitable bioorthogonal chemical probe to investigate a given biological system remains a challenge. In this Perspective, we put forward a series of fitness factors that can be used to assess the performance of bioorthogonal chemical probes. The consideration of these criteria should encourage continuous innovation in bioorthogonal probe development as well as enhance the quality of biological data.

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Year:  2019        PMID: 31769957      PMCID: PMC7643054          DOI: 10.1021/acschembio.9b00755

Source DB:  PubMed          Journal:  ACS Chem Biol        ISSN: 1554-8929            Impact factor:   5.100


  63 in total

Review 1.  Click and release: bioorthogonal approaches to "on-demand" activation of prodrugs.

Authors:  Xingyue Ji; Zhixiang Pan; Bingchen Yu; Ladie Kimberly De La Cruz; Yueqin Zheng; Bowen Ke; Binghe Wang
Journal:  Chem Soc Rev       Date:  2019-02-18       Impact factor: 54.564

Review 2.  Pyrrolysyl-tRNA synthetase: an ordinary enzyme but an outstanding genetic code expansion tool.

Authors:  Wei Wan; Jeffery M Tharp; Wenshe R Liu
Journal:  Biochim Biophys Acta       Date:  2014-03-12

3.  Fluorogenic azidofluoresceins for biological imaging.

Authors:  Peyton Shieh; Matthew J Hangauer; Carolyn R Bertozzi
Journal:  J Am Chem Soc       Date:  2012-10-10       Impact factor: 15.419

4.  Spirohexene-Tetrazine Ligation Enables Bioorthogonal Labeling of Class B G Protein-Coupled Receptors in Live Cells.

Authors:  Carlo P Ramil; Maoqing Dong; Peng An; Tracey M Lewandowski; Zhipeng Yu; Laurence J Miller; Qing Lin
Journal:  J Am Chem Soc       Date:  2017-09-15       Impact factor: 15.419

5.  Sterically Shielded, Stabilized Nitrile Imine for Rapid Bioorthogonal Protein Labeling in Live Cells.

Authors:  Peng An; Tracey M Lewandowski; Tuğçe G Erbay; Peng Liu; Qing Lin
Journal:  J Am Chem Soc       Date:  2018-04-02       Impact factor: 15.419

6.  Labeling live cells by copper-catalyzed alkyne--azide click chemistry.

Authors:  Vu Hong; Nicole F Steinmetz; Marianne Manchester; M G Finn
Journal:  Bioconjug Chem       Date:  2010-10-20       Impact factor: 4.774

7.  Cellular consequences of copper complexes used to catalyze bioorthogonal click reactions.

Authors:  David C Kennedy; Craig S McKay; Marc C B Legault; Dana C Danielson; Jessie A Blake; Adrian F Pegoraro; Albert Stolow; Zoltan Mester; John Paul Pezacki
Journal:  J Am Chem Soc       Date:  2011-10-19       Impact factor: 15.419

Review 8.  Chemical probing of glycans in cells and organisms.

Authors:  Sara H Rouhanifard; Lars Ulrik Nordstrøm; Tianqing Zheng; Peng Wu
Journal:  Chem Soc Rev       Date:  2012-12-21       Impact factor: 54.564

9.  Development of background-free tame fluorescent probes for intracellular live cell imaging.

Authors:  Samira Husen Alamudi; Rudrakanta Satapathy; Jihyo Kim; Dongdong Su; Haiyan Ren; Rajkumar Das; Lingna Hu; Enrique Alvarado-Martínez; Jung Yeol Lee; Christian Hoppmann; Eduardo Peña-Cabrera; Hyung-Ho Ha; Hee-Sung Park; Lei Wang; Young-Tae Chang
Journal:  Nat Commun       Date:  2016-06-20       Impact factor: 14.919

10.  Bioorthogonal chemistry: fishing for selectivity in a sea of functionality.

Authors:  Ellen M Sletten; Carolyn R Bertozzi
Journal:  Angew Chem Int Ed Engl       Date:  2009       Impact factor: 15.336

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  11 in total

1.  Fluorescent bioorthogonal labeling of class B GPCRs in live cells.

Authors:  Srikanth Kumar Gangam; Qing Lin
Journal:  Methods Enzymol       Date:  2020-06-15       Impact factor: 1.600

2.  Developing bioorthogonal probes to span a spectrum of reactivities.

Authors:  Sean S Nguyen; Jennifer A Prescher
Journal:  Nat Rev Chem       Date:  2020-07-21       Impact factor: 34.035

3.  Superfast Tetrazole-BCN Cycloaddition Reaction for Bioorthogonal Protein Labeling on Live Cells.

Authors:  Gangam Srikanth Kumar; Stefano Racioppi; Eva Zurek; Qing Lin
Journal:  J Am Chem Soc       Date:  2021-12-29       Impact factor: 15.419

4.  Bioorthogonal chemistry.

Authors:  Samuel L Scinto; Didier A Bilodeau; Robert Hincapie; Wankyu Lee; Sean S Nguyen; Minghao Xu; Christopher W Am Ende; M G Finn; Kathrin Lang; Qing Lin; John Paul Pezacki; Jennifer A Prescher; Marc S Robillard; Joseph M Fox
Journal:  Nat Rev Methods Primers       Date:  2021-04-15

5.  Seeking Citius: Photochemical Access of Reactive Intermediates for Faster Bioorthogonal Reactions.

Authors:  Gangam Srikanth Kumar; Qing Lin
Journal:  Chembiochem       Date:  2022-06-09       Impact factor: 3.461

6.  Fluorogenic Cyclopropenones for Multicomponent, Real-Time Imaging.

Authors:  Tyler K Heiss; Robert S Dorn; Andrew J Ferreira; Anna C Love; Jennifer A Prescher
Journal:  J Am Chem Soc       Date:  2022-04-20       Impact factor: 16.383

Review 7.  Covalent labeling of nucleic acids.

Authors:  Nils Klöcker; Florian P Weissenboeck; Andrea Rentmeister
Journal:  Chem Soc Rev       Date:  2020-10-21       Impact factor: 54.564

8.  Bioorthogonal Hydroamination of Push-Pull-Activated Linear Alkynes.

Authors:  Dahye Kang; Sheldon T Cheung; Justin Kim
Journal:  Angew Chem Int Ed Engl       Date:  2021-06-24       Impact factor: 16.823

9.  Diverse protein manipulations with genetically encoded glutamic acid benzyl ester.

Authors:  Xiaochen Yang; Hui Miao; Ruotong Xiao; Luyao Wang; Yan Zhao; Qifan Wu; Yanli Ji; Juanjuan Du; Hongqiang Qin; Weimin Xuan
Journal:  Chem Sci       Date:  2021-06-17       Impact factor: 9.825

10.  Intracellular bioorthogonal labeling of glucagon receptor via tetrazine ligation.

Authors:  Yulin Tian; Ming Fang; Qing Lin
Journal:  Bioorg Med Chem       Date:  2021-06-06       Impact factor: 3.461

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