Literature DB >> 27942842

Isolation and Genome Sequencing of a Novel Pseudoalteromonas Phage PH1.

Zhaoyang Liu1, Min Wang2,3, Xue Meng1, Yan Li1, Duobing Wang1, Yong Jiang4, Hongbing Shao1, Yaoyuan Zhang1.   

Abstract

The family Pseudoalteromonas is highly adaptable to dissimilar ecological habitats and plays an important ecological role in the marine environment. In this study, a new Pseudoalteromonas phage PH1 was isolated from the Yellow Sea. To better understand the bacteriophage, its biological properties, including morphology, host range, growth phenotype, thermal and pH stability, and nucleic acid composition, were investigated in detail. The result showed that the phage PH1 is a Podoviridae-phage with an icosahedral head (60 nm of diameter) and a short tail (26 nm in length). The phage PH1 genome consists of 42,685 bp length double-stranded DNA with a G+C content of 42.24% and is predicted to have 55 open reading frames (ORFs) with an average length of 740 bp nucleotides each. The phage PH1 genome adds a new Podoviridae-phage genome to marine bacteriophage dataset, which will provide useful basic information for further molecular research on interaction mechanisms between bacteriophages and their hosts.

Entities:  

Mesh:

Substances:

Year:  2016        PMID: 27942842     DOI: 10.1007/s00284-016-1175-9

Source DB:  PubMed          Journal:  Curr Microbiol        ISSN: 0343-8651            Impact factor:   2.188


  24 in total

Review 1.  Are viruses driving microbial diversification and diversity?

Authors:  Markus G Weinbauer; Fereidoun Rassoulzadegan
Journal:  Environ Microbiol       Date:  2004-01       Impact factor: 5.491

2.  Characterization and Genome Sequencing of a Novel Bacteriophage PH101 Infecting Pseudoalteromonas marina BH101 from the Yellow Sea of China.

Authors:  Duo-bing Wang; Meng-qi Sun; Hong-bing Shao; Yan Li; Xue Meng; Zhao-yang Liu; Min Wang
Journal:  Curr Microbiol       Date:  2015-08-14       Impact factor: 2.188

3.  Genetic diversity of marine Synechococcus and co-occurring cyanophage communities: evidence for viral control of phytoplankton.

Authors:  Martin Mühling; Nicholas J Fuller; Andrew Millard; Paul J Somerfield; Dominique Marie; William H Wilson; David J Scanlan; Anton F Post; Ian Joint; Nicholas H Mann
Journal:  Environ Microbiol       Date:  2005-04       Impact factor: 5.491

Review 4.  Marine phage genomics: what have we learned?

Authors:  John H Paul; Matthew B Sullivan
Journal:  Curr Opin Biotechnol       Date:  2005-06       Impact factor: 9.740

5.  Marine T4-type bacteriophages, a ubiquitous component of the dark matter of the biosphere.

Authors:  Jonathan Filée; Françoise Tétart; Curtis A Suttle; H M Krisch
Journal:  Proc Natl Acad Sci U S A       Date:  2005-08-22       Impact factor: 11.205

6.  Phages of Lactobacillus casei/paracasei: response to environmental factors and interaction with collection and commercial strains.

Authors:  M L Capra; A Quiberoni; J Reinheimer
Journal:  J Appl Microbiol       Date:  2006-02       Impact factor: 3.772

7.  Unifying classical and molecular taxonomic classification: analysis of the Podoviridae using BLASTP-based tools.

Authors:  Rob Lavigne; Donald Seto; Padmanabhan Mahadevan; Hans-W Ackermann; Andrew M Kropinski
Journal:  Res Microbiol       Date:  2008-04-18       Impact factor: 3.992

8.  Structural characterization of the bacteriophage T7 tail machinery.

Authors:  Ana Cuervo; Mar Pulido-Cid; Mónica Chagoyen; Rocío Arranz; Verónica A González-García; Carmela Garcia-Doval; José R Castón; José M Valpuesta; Mark J van Raaij; Jaime Martín-Benito; José L Carrascosa
Journal:  J Biol Chem       Date:  2013-07-24       Impact factor: 5.157

9.  Comparative genomics reveals a deep-sea sediment-adapted life style of Pseudoalteromonas sp. SM9913.

Authors:  Qi-Long Qin; Yang Li; Yan-Jiao Zhang; Zhe-Min Zhou; Wei-Xin Zhang; Xiu-Lan Chen; Xi-Ying Zhang; Bai-Cheng Zhou; Lei Wang; Yu-Zhong Zhang
Journal:  ISME J       Date:  2010-08-12       Impact factor: 10.302

10.  Bacteriophage phiYeO3-12, specific for Yersinia enterocolitica serotype O:3, is related to coliphages T3 and T7.

Authors:  M Pajunen; S Kiljunen; M Skurnik
Journal:  J Bacteriol       Date:  2000-09       Impact factor: 3.490

View more
  6 in total

1.  Isolation and Complete Genome Sequence of a Novel Marinobacter Phage B23.

Authors:  Min Zhu; Min Wang; Yong Jiang; Siyuan You; Guihua Zhao; Yundan Liu; Qingwei Yang; Qian Liu; Zhaoyang Liu; Zheng Gong; Hongbing Shao
Journal:  Curr Microbiol       Date:  2018-09-14       Impact factor: 2.188

2.  Complete genomic sequence of bacteriophage P23: a novel Vibrio phage isolated from the Yellow Sea, China.

Authors:  Yundan Liu; Lei Zhao; Min Wang; Qi Wang; Xinran Zhang; Yuye Han; Meiwen Wang; Tong Jiang; Hongbing Shao; Yong Jiang; Andrew McMinn
Journal:  Virus Genes       Date:  2019-08-16       Impact factor: 2.332

3.  Genome Analysis of Two Novel Lytic Vibrio maritimus Phages Isolated from the Coastal Surface Seawater of Qingdao, China.

Authors:  Yuye Han; Min Wang; Qian Liu; Yundan Liu; Qi Wang; Xueping Duan; Lu Liu; Yong Jiang; Hongbing Shao; Cui Guo
Journal:  Curr Microbiol       Date:  2019-07-13       Impact factor: 2.188

4.  Genome Analysis of Two Novel Synechococcus Phages That Lack Common Auxiliary Metabolic Genes: Possible Reasons and Ecological Insights by Comparative Analysis of Cyanomyoviruses.

Authors:  Tong Jiang; Cui Guo; Min Wang; Meiwen Wang; Xinran Zhang; Yundan Liu; Yantao Liang; Yong Jiang; Hui He; Hongbing Shao; Andrew McMinn
Journal:  Viruses       Date:  2020-07-25       Impact factor: 5.048

5.  A Novel Wide-Range Freshwater Cyanophage MinS1 Infecting the Harmful Cyanobacterium Microcystis aeruginosa.

Authors:  Shanshan Zhang; Xiaoqi He; Lei Cao; Yigang Tong; Baohua Zhao; Wenlin An
Journal:  Viruses       Date:  2022-02-20       Impact factor: 5.048

6.  Characterization and Genomic Analysis of ssDNA Vibriophage vB_VpaM_PG19 within Microviridae, Representing a Novel Viral Genus.

Authors:  Ruizhe Guo; Kaiyang Zheng; Lin Luo; Yundan Liu; Hongbing Shao; Cui Guo; Hui He; Hualong Wang; Yeong Yik Sung; Wen Jye Mok; Li Lian Wong; Yu-Zhong Zhang; Yantao Liang; Andrew McMinn; Min Wang
Journal:  Microbiol Spectr       Date:  2022-07-06
  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.