Literature DB >> 15961031

Marine phage genomics: what have we learned?

John H Paul1, Matthew B Sullivan.   

Abstract

Marine phages are the most abundant and diverse form of life on the planet, and their genomes have been described as the largest untapped reservoir of genomic information. To date, however, the complete genome sequences of only 17 marine phage are known. Nevertheless, these genomes have revealed some interesting features, including the presence of photosynthetic genes in cyanophage and common patterns of genomic organization. Intriguing findings are also being made from studies of the uncultivated marine viral community genome ('metavirome'). The greatest challenge in interpreting the biology of these phages, and for making comparisons with their terrestrial counterparts, is the high proportion of unidentifiable open reading frames (approximately 60%). Future studies are likely to focus on sequencing more marine phage genomes from disparate hosts and diverse environments and on further basic studies of the biology of existing marine phages.

Mesh:

Year:  2005        PMID: 15961031     DOI: 10.1016/j.copbio.2005.03.007

Source DB:  PubMed          Journal:  Curr Opin Biotechnol        ISSN: 0958-1669            Impact factor:   9.740


  35 in total

1.  High coverage metabolomics analysis reveals phage-specific alterations to Pseudomonas aeruginosa physiology during infection.

Authors:  Jeroen De Smet; Michael Zimmermann; Maria Kogadeeva; Pieter-Jan Ceyssens; Wesley Vermaelen; Bob Blasdel; Ho Bin Jang; Uwe Sauer; Rob Lavigne
Journal:  ISME J       Date:  2016-02-16       Impact factor: 10.302

2.  PPR-Meta: a tool for identifying phages and plasmids from metagenomic fragments using deep learning.

Authors:  Zhencheng Fang; Jie Tan; Shufang Wu; Mo Li; Congmin Xu; Zhongjie Xie; Huaiqiu Zhu
Journal:  Gigascience       Date:  2019-06-01       Impact factor: 6.524

3.  Phage therapy of coral white plague disease: properties of phage BA3.

Authors:  Rotem Efrony; Ilil Atad; Eugene Rosenberg
Journal:  Curr Microbiol       Date:  2008-10-16       Impact factor: 2.188

4.  Microbial and viral metagenomes of a subtropical freshwater reservoir subject to climatic disturbances.

Authors:  Ching-Hung Tseng; Pei-Wen Chiang; Fuh-Kwo Shiah; Yi-Lung Chen; Jia-Rong Liou; Ting-Chang Hsu; Suhinthan Maheswararajah; Isaam Saeed; Saman Halgamuge; Sen-Lin Tang
Journal:  ISME J       Date:  2013-07-11       Impact factor: 10.302

5.  The temperate marine phage PhiHAP-1 of Halomonas aquamarina possesses a linear plasmid-like prophage genome.

Authors:  Jennifer M Mobberley; R Nathan Authement; Anca M Segall; John H Paul
Journal:  J Virol       Date:  2008-04-30       Impact factor: 5.103

Review 6.  Virus-host interactions and their roles in coral reef health and disease.

Authors:  Rebecca Vega Thurber; Jérôme P Payet; Andrew R Thurber; Adrienne M S Correa
Journal:  Nat Rev Microbiol       Date:  2017-01-16       Impact factor: 60.633

7.  Tales from a thousand and one phages.

Authors:  Francisco Rodriguez-Valera; Carolina Megumi Mizuno; Rohit Ghai
Journal:  Bacteriophage       Date:  2014-02-18

8.  Extracellular DNA can preserve the genetic signatures of present and past viral infection events in deep hypersaline anoxic basins.

Authors:  C Corinaldesi; M Tangherlini; G M Luna; A Dell'anno
Journal:  Proc Biol Sci       Date:  2014-02-12       Impact factor: 5.349

9.  Isolation and Genome Sequencing of a Novel Pseudoalteromonas Phage PH1.

Authors:  Zhaoyang Liu; Min Wang; Xue Meng; Yan Li; Duobing Wang; Yong Jiang; Hongbing Shao; Yaoyuan Zhang
Journal:  Curr Microbiol       Date:  2016-12-09       Impact factor: 2.188

10.  Analysis of high-throughput sequencing and annotation strategies for phage genomes.

Authors:  Matthew R Henn; Matthew B Sullivan; Nicole Stange-Thomann; Marcia S Osburne; Aaron M Berlin; Libusha Kelly; Chandri Yandava; Chinnappa Kodira; Qiandong Zeng; Michael Weiand; Todd Sparrow; Sakina Saif; Georgia Giannoukos; Sarah K Young; Chad Nusbaum; Bruce W Birren; Sallie W Chisholm
Journal:  PLoS One       Date:  2010-02-05       Impact factor: 3.240

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