Literature DB >> 27928055

Minimum-noise production of translation factor eIF4G maps to a mechanistically determined optimal rate control window for protein synthesis.

Xiang Meng1, Helena Firczuk1, Paola Pietroni1, Richard Westbrook1, Estelle Dacheux1, Pedro Mendes2, John E G McCarthy3.   

Abstract

Gene expression noise influences organism evolution and fitness. The mechanisms determining the relationship between stochasticity and the functional role of translation machinery components are critical to viability. eIF4G is an essential translation factor that exerts strong control over protein synthesis. We observe an asymmetric, approximately bell-shaped, relationship between the average intracellular abundance of eIF4G and rates of cell population growth and global mRNA translation, with peak rates occurring at normal physiological abundance. This relationship fits a computational model in which eIF4G is at the core of a multi-component-complex assembly pathway. This model also correctly predicts a plateau-like response of translation to super-physiological increases in abundance of the other cap-complex factors, eIF4E and eIF4A. Engineered changes in eIF4G abundance amplify noise, demonstrating that minimum stochasticity coincides with physiological abundance of this factor. Noise is not increased when eIF4E is overproduced. Plasmid-mediated synthesis of eIF4G imposes increased global gene expression stochasticity and reduced viability because the intrinsic noise for this factor influences total cellular gene noise. The naturally evolved eIF4G gene expression noise minimum maps within the optimal activity zone dictated by eIF4G's mechanistic role. Rate control and noise are therefore interdependent and have co-evolved to share an optimal physiological abundance point.
© The Author(s) 2016. Published by Oxford University Press on behalf of Nucleic Acids Research.

Entities:  

Mesh:

Substances:

Year:  2016        PMID: 27928055      PMCID: PMC5314777          DOI: 10.1093/nar/gkw1194

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  42 in total

1.  Ribosome loading onto the mRNA cap is driven by conformational coupling between eIF4G and eIF4E.

Authors:  John D Gross; Nathan J Moerke; Tobias von der Haar; Alexey A Lugovskoy; Alan B Sachs; John E G McCarthy; Gerhard Wagner
Journal:  Cell       Date:  2003-12-12       Impact factor: 41.582

2.  Control of stochasticity in eukaryotic gene expression.

Authors:  Jonathan M Raser; Erin K O'Shea
Journal:  Science       Date:  2004-05-27       Impact factor: 47.728

3.  Dissecting the regulatory circuitry of a eukaryotic genome.

Authors:  F C Holstege; E G Jennings; J J Wyrick; T I Lee; C J Hengartner; M R Green; T R Golub; E S Lander; R A Young
Journal:  Cell       Date:  1998-11-25       Impact factor: 41.582

4.  Cooperative modulation by eIF4G of eIF4E-binding to the mRNA 5' cap in yeast involves a site partially shared by p20.

Authors:  M Ptushkina; T von der Haar; S Vasilescu; R Frank; R Birkenhäger; J E McCarthy
Journal:  EMBO J       Date:  1998-08-17       Impact factor: 11.598

5.  Single-cell proteomic analysis of S. cerevisiae reveals the architecture of biological noise.

Authors:  John R S Newman; Sina Ghaemmaghami; Jan Ihmels; David K Breslow; Matthew Noble; Joseph L DeRisi; Jonathan S Weissman
Journal:  Nature       Date:  2006-05-14       Impact factor: 49.962

Review 6.  A walk-through of the yeast mating pheromone response pathway.

Authors:  Lee Bardwell
Journal:  Peptides       Date:  2005-02       Impact factor: 3.750

Review 7.  Posttranscriptional control of gene expression in yeast.

Authors:  J E McCarthy
Journal:  Microbiol Mol Biol Rev       Date:  1998-12       Impact factor: 11.056

8.  Single-RNA counting reveals alternative modes of gene expression in yeast.

Authors:  Daniel Zenklusen; Daniel R Larson; Robert H Singer
Journal:  Nat Struct Mol Biol       Date:  2008-11-16       Impact factor: 15.369

9.  Single-molecule resolution fluorescent in situ hybridization (smFISH) in the yeast S. cerevisiae.

Authors:  Samir Rahman; Daniel Zenklusen
Journal:  Methods Mol Biol       Date:  2013

10.  Yeast eukaryotic initiation factor 4B (eIF4B) enhances complex assembly between eIF4A and eIF4G in vivo.

Authors:  Eun-Hee Park; Sarah E Walker; Fujun Zhou; Joseph M Lee; Vaishnavi Rajagopal; Jon R Lorsch; Alan G Hinnebusch
Journal:  J Biol Chem       Date:  2012-11-26       Impact factor: 5.486

View more
  2 in total

1.  Translation initiation events on structured eukaryotic mRNAs generate gene expression noise.

Authors:  Estelle Dacheux; Naglis Malys; Xiang Meng; Vinoy Ramachandran; Pedro Mendes; John E G McCarthy
Journal:  Nucleic Acids Res       Date:  2017-06-20       Impact factor: 16.971

2.  An Overview of Network-Based and -Free Approaches for Stochastic Simulation of Biochemical Systems.

Authors:  Abhishekh Gupta; Pedro Mendes
Journal:  Computation (Basel)       Date:  2018-01-31
  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.