Literature DB >> 27924077

Metabolic regulation of gene expression through histone acylations.

Benjamin R Sabari1, Di Zhang2, C David Allis1, Yingming Zhao2.   

Abstract

Eight types of short-chain Lys acylations have recently been identified on histones: propionylation, butyrylation, 2-hydroxyisobutyrylation, succinylation, malonylation, glutarylation, crotonylation and β-hydroxybutyrylation. Emerging evidence suggests that these histone modifications affect gene expression and are structurally and functionally different from the widely studied histone Lys acetylation. In this Review, we discuss the regulation of non-acetyl histone acylation by enzymatic and metabolic mechanisms, the acylation 'reader' proteins that mediate the effects of different acylations and their physiological functions, which include signal-dependent gene activation, spermatogenesis, tissue injury and metabolic stress. We propose a model to explain our present understanding of how differential histone acylation is regulated by the metabolism of the different acyl-CoA forms, which in turn modulates the regulation of gene expression.

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Year:  2016        PMID: 27924077      PMCID: PMC5320945          DOI: 10.1038/nrm.2016.140

Source DB:  PubMed          Journal:  Nat Rev Mol Cell Biol        ISSN: 1471-0072            Impact factor:   94.444


  104 in total

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2.  Molecular mechanism of histone H3K4me3 recognition by plant homeodomain of ING2.

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3.  The transcriptional coactivators p300 and CBP are histone acetyltransferases.

Authors:  V V Ogryzko; R L Schiltz; V Russanova; B H Howard; Y Nakatani
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Review 4.  Metabolic regulation of histone post-translational modifications.

Authors:  Jing Fan; Kimberly A Krautkramer; Jessica L Feldman; John M Denu
Journal:  ACS Chem Biol       Date:  2015-01-16       Impact factor: 5.100

Review 5.  Protein analysis by shotgun/bottom-up proteomics.

Authors:  Yaoyang Zhang; Bryan R Fonslow; Bing Shan; Moon-Chang Baek; John R Yates
Journal:  Chem Rev       Date:  2013-02-26       Impact factor: 60.622

6.  Acetylation site specificities of lysine deacetylase inhibitors in human cells.

Authors:  Christian Schölz; Brian T Weinert; Sebastian A Wagner; Petra Beli; Yasuyuki Miyake; Jun Qi; Lars J Jensen; Werner Streicher; Anna R McCarthy; Nicholas J Westwood; Sonia Lain; Jürgen Cox; Patrick Matthias; Matthias Mann; James E Bradner; Chunaram Choudhary
Journal:  Nat Biotechnol       Date:  2015-03-09       Impact factor: 54.908

7.  Identification of 67 histone marks and histone lysine crotonylation as a new type of histone modification.

Authors:  Minjia Tan; Hao Luo; Sangkyu Lee; Fulai Jin; Jeong Soo Yang; Emilie Montellier; Thierry Buchou; Zhongyi Cheng; Sophie Rousseaux; Nisha Rajagopal; Zhike Lu; Zhen Ye; Qin Zhu; Joanna Wysocka; Yang Ye; Saadi Khochbin; Bing Ren; Yingming Zhao
Journal:  Cell       Date:  2011-09-16       Impact factor: 41.582

8.  Suppression of oxidative stress by β-hydroxybutyrate, an endogenous histone deacetylase inhibitor.

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9.  Akt-dependent metabolic reprogramming regulates tumor cell histone acetylation.

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Journal:  Cell Metab       Date:  2014-07-03       Impact factor: 27.287

Review 10.  Histone Acylation beyond Acetylation: Terra Incognita in Chromatin Biology.

Authors:  Sophie Rousseaux; Saadi Khochbin
Journal:  Cell J       Date:  2015-04-08       Impact factor: 2.479

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  244 in total

Review 1.  Metabolic Regulation of Tissue Stem Cells.

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3.  Histone Butyrylation/ Acetylation Remains Unchanged in Triple Negative Breast Cancer Cells after a Long Term Metabolic Reprogramming.

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Review 4.  The chromatin landscape of neuronal plasticity.

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5.  Emerging Roles for SIRT5 in Metabolism and Cancer.

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Journal:  Antioxid Redox Signal       Date:  2017-10-26       Impact factor: 8.401

6.  Class I histone deacetylases are major histone decrotonylases: evidence for critical and broad function of histone crotonylation in transcription.

Authors:  Wei Wei; Xiaoguang Liu; Jiwei Chen; Shennan Gao; Lu Lu; Huifang Zhang; Guangjin Ding; Zhiqiang Wang; Zhongzhou Chen; Tieliu Shi; Jiwen Li; Jianjun Yu; Jiemin Wong
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7.  Advances in the Development of Therapeutics for Cytomegalovirus Infections.

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Review 8.  Endothelial Metabolic Control of Lymphangiogenesis.

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Review 9.  Advances into understanding metabolites as signaling molecules in cancer progression.

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10.  Nudt19 is a renal CoA diphosphohydrolase with biochemical and regulatory properties that are distinct from the hepatic Nudt7 isoform.

Authors:  Stephanie A Shumar; Evan W Kerr; Werner J Geldenhuys; Grace E Montgomery; Paolo Fagone; Puchong Thirawatananond; Harry Saavedra; Sandra B Gabelli; Roberta Leonardi
Journal:  J Biol Chem       Date:  2018-01-29       Impact factor: 5.157

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