Literature DB >> 25562692

Metabolic regulation of histone post-translational modifications.

Jing Fan1, Kimberly A Krautkramer, Jessica L Feldman, John M Denu.   

Abstract

Histone post-translational modifications regulate transcription and other DNA-templated functions. This process is dynamically regulated by specific modifying enzymes whose activities require metabolites that either serve as cosubstrates or act as activators/inhibitors. Therefore, metabolism can influence histone modification by changing local concentrations of key metabolites. Physiologically, the epigenetic response to metabolism is important for nutrient sensing and environment adaption. In pathologic states, the connection between metabolism and histone modification mediates epigenetic abnormality in complex disease. In this review, we summarize recent studies of the molecular mechanisms involved in metabolic regulation of histone modifications and discuss their biological significance.

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Year:  2015        PMID: 25562692      PMCID: PMC4407823          DOI: 10.1021/cb500846u

Source DB:  PubMed          Journal:  ACS Chem Biol        ISSN: 1554-8929            Impact factor:   5.100


  145 in total

1.  The methyl-CpG-binding protein MeCP2 links DNA methylation to histone methylation.

Authors:  Francois Fuks; Paul J Hurd; Daniel Wolf; Xinsheng Nan; Adrian P Bird; Tony Kouzarides
Journal:  J Biol Chem       Date:  2002-11-09       Impact factor: 5.157

2.  Biosynthesis of diphosphopyridine nucleotide. I. Identification of intermediates.

Authors:  J PREISS; P HANDLER
Journal:  J Biol Chem       Date:  1958-08       Impact factor: 5.157

3.  Connecting threads: epigenetics and metabolism.

Authors:  Sayako Katada; Axel Imhof; Paolo Sassone-Corsi
Journal:  Cell       Date:  2012-01-20       Impact factor: 41.582

4.  Crystal structure of the nucleosome core particle at 2.8 A resolution.

Authors:  K Luger; A W Mäder; R K Richmond; D F Sargent; T J Richmond
Journal:  Nature       Date:  1997-09-18       Impact factor: 49.962

5.  The dynamic regulation of NAD metabolism in mitochondria.

Authors:  Liana Roberts Stein; Shin-ichiro Imai
Journal:  Trends Endocrinol Metab       Date:  2012-07-21       Impact factor: 12.015

6.  Regulation of rat hepatic L-pyruvate kinase promoter composition and activity by glucose, n-3 polyunsaturated fatty acids, and peroxisome proliferator-activated receptor-alpha agonist.

Authors:  Jinghua Xu; Barbara Christian; Donald B Jump
Journal:  J Biol Chem       Date:  2006-04-27       Impact factor: 5.157

7.  Identification of 67 histone marks and histone lysine crotonylation as a new type of histone modification.

Authors:  Minjia Tan; Hao Luo; Sangkyu Lee; Fulai Jin; Jeong Soo Yang; Emilie Montellier; Thierry Buchou; Zhongyi Cheng; Sophie Rousseaux; Nisha Rajagopal; Zhike Lu; Zhen Ye; Qin Zhu; Joanna Wysocka; Yang Ye; Saadi Khochbin; Bing Ren; Yingming Zhao
Journal:  Cell       Date:  2011-09-16       Impact factor: 41.582

8.  Suppression of oxidative stress by β-hydroxybutyrate, an endogenous histone deacetylase inhibitor.

Authors:  Tadahiro Shimazu; Matthew D Hirschey; John Newman; Wenjuan He; Kotaro Shirakawa; Natacha Le Moan; Carrie A Grueter; Hyungwook Lim; Laura R Saunders; Robert D Stevens; Christopher B Newgard; Robert V Farese; Rafael de Cabo; Scott Ulrich; Katerina Akassoglou; Eric Verdin
Journal:  Science       Date:  2012-12-06       Impact factor: 47.728

9.  Akt-dependent metabolic reprogramming regulates tumor cell histone acetylation.

Authors:  Joyce V Lee; Alessandro Carrer; Supriya Shah; Nathaniel W Snyder; Shuanzeng Wei; Sriram Venneti; Andrew J Worth; Zuo-Fei Yuan; Hee-Woong Lim; Shichong Liu; Ellen Jackson; Nicole M Aiello; Naomi B Haas; Timothy R Rebbeck; Alexander Judkins; Kyoung-Jae Won; Lewis A Chodosh; Benjamin A Garcia; Ben Z Stanger; Michael D Feldman; Ian A Blair; Kathryn E Wellen
Journal:  Cell Metab       Date:  2014-07-03       Impact factor: 27.287

Review 10.  Identification and interrogation of combinatorial histone modifications.

Authors:  Kelly R Karch; Jamie E Denizio; Ben E Black; Benjamin A Garcia
Journal:  Front Genet       Date:  2013-12-20       Impact factor: 4.599

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  96 in total

1.  A Positive Feedback Loop Between c-Myc Upregulation, Glycolytic Shift, and Histone Acetylation Enhances Cancer Stem Cell-like Property and Tumorigenicity of Cr(VI)-transformed Cells.

Authors:  Marco Clementino; Jie Xie; Ping Yang; Yunfei Li; Hsuan-Pei Lin; William K Fenske; Hua Tao; Kazuya Kondo; Chengfeng Yang; Zhishan Wang
Journal:  Toxicol Sci       Date:  2020-09-01       Impact factor: 4.849

Review 2.  Role of epigenomic mechanisms in the onset and management of insulin resistance.

Authors:  Andrea G Izquierdo; Ana B Crujeiras
Journal:  Rev Endocr Metab Disord       Date:  2019-03       Impact factor: 6.514

Review 3.  Chemical signaling between gut microbiota and host chromatin: What is your gut really saying?

Authors:  Kimberly A Krautkramer; Federico E Rey; John M Denu
Journal:  J Biol Chem       Date:  2017-04-07       Impact factor: 5.157

4.  Frontline Science: Monocytes sequentially rewire metabolism and bioenergetics during an acute inflammatory response.

Authors:  Xuewei Zhu; Allison Meyers; David Long; Brian Ingram; Tiefu Liu; Barbara K Yoza; Vidula Vachharajani; Charles E McCall
Journal:  J Leukoc Biol       Date:  2019-01-11       Impact factor: 4.962

Review 5.  Metabolic programming of the epigenome: host and gut microbial metabolite interactions with host chromatin.

Authors:  Kimberly A Krautkramer; Rashpal S Dhillon; John M Denu; Hannah V Carey
Journal:  Transl Res       Date:  2017-09-01       Impact factor: 7.012

Review 6.  Gut microbial metabolites as multi-kingdom intermediates.

Authors:  Kimberly A Krautkramer; Jing Fan; Fredrik Bäckhed
Journal:  Nat Rev Microbiol       Date:  2020-09-23       Impact factor: 60.633

Review 7.  Integrating Proteomics and Targeted Metabolomics to Understand Global Changes in Histone Modifications.

Authors:  Johayra Simithy; Simone Sidoli; Benjamin A Garcia
Journal:  Proteomics       Date:  2018-04-20       Impact factor: 3.984

Review 8.  Recent Advances in the Etiopathogenesis of Inflammatory Bowel Disease: The Role of Omics.

Authors:  Eleni Stylianou
Journal:  Mol Diagn Ther       Date:  2018-02       Impact factor: 4.074

9.  Competitive inhibition can linearize dose-response and generate a linear rectifier.

Authors:  Yonatan Savir; Benjamin P Tu; Michael Springer
Journal:  Cell Syst       Date:  2015-09-23       Impact factor: 10.304

10.  TLR signaling adapter BCAP regulates inflammatory to reparatory macrophage transition by promoting histone lactylation.

Authors:  Ricardo A Irizarry-Caro; Margaret M McDaniel; Garrett R Overcast; Viral G Jain; Ty Dale Troutman; Chandrashekhar Pasare
Journal:  Proc Natl Acad Sci U S A       Date:  2020-11-16       Impact factor: 11.205

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