Literature DB >> 27911745

The Role of Epigenetic Mechanisms in the Regulation of Gene Expression in the Nervous System.

Justyna Cholewa-Waclaw1, Adrian Bird1, Melanie von Schimmelmann2, Anne Schaefer2, Huimei Yu3, Hongjun Song3, Ram Madabhushi4, Li-Huei Tsai5.   

Abstract

Neuroepigenetics is a newly emerging field in neurobiology that addresses the epigenetic mechanism of gene expression regulation in various postmitotic neurons, both over time and in response to environmental stimuli. In addition to its fundamental contribution to our understanding of basic neuronal physiology, alterations in these neuroepigenetic mechanisms have been recently linked to numerous neurodevelopmental, psychiatric, and neurodegenerative disorders. This article provides a selective review of the role of DNA and histone modifications in neuronal signal-induced gene expression regulation, plasticity, and survival and how targeting these mechanisms could advance the development of future therapies. In addition, we discuss a recent discovery on how double-strand breaks of genomic DNA mediate the rapid induction of activity-dependent gene expression in neurons.
Copyright © 2016 the authors 0270-6474/16/3611427-08$15.00/0.

Entities:  

Keywords:  DNA double strand breaks; DNA methylation; MeCP2; polycomb repressive complex; topoisomerase II

Mesh:

Substances:

Year:  2016        PMID: 27911745      PMCID: PMC5125210          DOI: 10.1523/JNEUROSCI.2492-16.2016

Source DB:  PubMed          Journal:  J Neurosci        ISSN: 0270-6474            Impact factor:   6.167


  87 in total

1.  MeCP2 binds to non-CG methylated DNA as neurons mature, influencing transcription and the timing of onset for Rett syndrome.

Authors:  Lin Chen; Kaifu Chen; Laura A Lavery; Steven Andrew Baker; Chad A Shaw; Wei Li; Huda Y Zoghbi
Journal:  Proc Natl Acad Sci U S A       Date:  2015-04-13       Impact factor: 11.205

2.  Covalent modification of DNA regulates memory formation.

Authors:  Courtney A Miller; J David Sweatt
Journal:  Neuron       Date:  2007-03-15       Impact factor: 17.173

3.  Dnmt1 and Dnmt3a maintain DNA methylation and regulate synaptic function in adult forebrain neurons.

Authors:  Jian Feng; Yu Zhou; Susan L Campbell; Thuc Le; En Li; J David Sweatt; Alcino J Silva; Guoping Fan
Journal:  Nat Neurosci       Date:  2010-03-14       Impact factor: 24.884

4.  Ezh2, the histone methyltransferase of PRC2, regulates the balance between self-renewal and differentiation in the cerebral cortex.

Authors:  João D Pereira; Stephen N Sansom; James Smith; Marc-Werner Dobenecker; Alexander Tarakhovsky; Frederick J Livesey
Journal:  Proc Natl Acad Sci U S A       Date:  2010-08-23       Impact factor: 11.205

5.  Role of Tet1 and 5-hydroxymethylcytosine in cocaine action.

Authors:  Jian Feng; Ningyi Shao; Keith E Szulwach; Vincent Vialou; Jimmy Huynh; Chun Zhong; Thuc Le; Deveroux Ferguson; Michael E Cahill; Yujing Li; Ja Wook Koo; Efrain Ribeiro; Benoit Labonte; Benjamin M Laitman; David Estey; Victoria Stockman; Pamela Kennedy; Thomas Couroussé; Isaac Mensah; Gustavo Turecki; Kym F Faull; Guo-li Ming; Hongjun Song; Guoping Fan; Patrizia Casaccia; Li Shen; Peng Jin; Eric J Nestler
Journal:  Nat Neurosci       Date:  2015-03-16       Impact factor: 24.884

6.  A large number of protein expression changes occur early in life and precede phenotype onset in a mouse model for huntington disease.

Authors:  Claus Zabel; Lei Mao; Ben Woodman; Michael Rohe; Maik A Wacker; Yvonne Kläre; Andrea Koppelstätter; Grit Nebrich; Oliver Klein; Susanne Grams; Andrew Strand; Ruth Luthi-Carter; Daniela Hartl; Joachim Klose; Gillian P Bates
Journal:  Mol Cell Proteomics       Date:  2008-11-30       Impact factor: 5.911

Review 7.  Epigenetic mechanisms in neurogenesis.

Authors:  Bing Yao; Kimberly M Christian; Chuan He; Peng Jin; Guo-Li Ming; Hongjun Song
Journal:  Nat Rev Neurosci       Date:  2016-06-23       Impact factor: 34.870

8.  Epigenomic Signatures of Neuronal Diversity in the Mammalian Brain.

Authors:  Alisa Mo; Eran A Mukamel; Fred P Davis; Chongyuan Luo; Gilbert L Henry; Serge Picard; Mark A Urich; Joseph R Nery; Terrence J Sejnowski; Ryan Lister; Sean R Eddy; Joseph R Ecker; Jeremy Nathans
Journal:  Neuron       Date:  2015-06-17       Impact factor: 17.173

9.  Tet3 regulates synaptic transmission and homeostatic plasticity via DNA oxidation and repair.

Authors:  Huimei Yu; Yijing Su; Jaehoon Shin; Chun Zhong; Junjie U Guo; Yi-Lan Weng; Fuying Gao; Daniel H Geschwind; Giovanni Coppola; Guo-li Ming; Hongjun Song
Journal:  Nat Neurosci       Date:  2015-04-27       Impact factor: 24.884

10.  Polycomb repressive complex 2 (PRC2) silences genes responsible for neurodegeneration.

Authors:  Melanie von Schimmelmann; Philip A Feinberg; Josefa M Sullivan; Stacy M Ku; Ana Badimon; Mary Kaye Duff; Zichen Wang; Alexander Lachmann; Scott Dewell; Avi Ma'ayan; Ming-Hu Han; Alexander Tarakhovsky; Anne Schaefer
Journal:  Nat Neurosci       Date:  2016-08-15       Impact factor: 24.884

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  46 in total

1.  Transcriptomic context of DRD1 is associated with prefrontal activity and behavior during working memory.

Authors:  Leonardo Fazio; Giulio Pergola; Marco Papalino; Pasquale Di Carlo; Anna Monda; Barbara Gelao; Nicola Amoroso; Sabina Tangaro; Antonio Rampino; Teresa Popolizio; Alessandro Bertolino; Giuseppe Blasi
Journal:  Proc Natl Acad Sci U S A       Date:  2018-05-07       Impact factor: 11.205

Review 2.  Cannabis and the Developing Brain: Insights into Its Long-Lasting Effects.

Authors:  Yasmin L Hurd; Olivier J Manzoni; Mikhail V Pletnikov; Francis S Lee; Sagnik Bhattacharyya; Miriam Melis
Journal:  J Neurosci       Date:  2019-10-16       Impact factor: 6.167

Review 3.  Epigenetic Regulation in Neurodegenerative Diseases.

Authors:  Amit Berson; Raffaella Nativio; Shelley L Berger; Nancy M Bonini
Journal:  Trends Neurosci       Date:  2018-06-07       Impact factor: 13.837

Review 4.  Polycomb repressive 2 complex-Molecular mechanisms of function.

Authors:  Valentina L Kouznetsova; Alex Tchekanov; Xiaoming Li; Xiaowen Yan; Igor F Tsigelny
Journal:  Protein Sci       Date:  2019-06-10       Impact factor: 6.725

Review 5.  Microglial memory of early life stress and inflammation: Susceptibility to neurodegeneration in adulthood.

Authors:  Paula Desplats; Ashley M Gutierrez; Marta C Antonelli; Martin G Frasch
Journal:  Neurosci Biobehav Rev       Date:  2019-11-05       Impact factor: 8.989

6.  The transcription factor XBP1 in memory and cognition: Implications in Alzheimer disease.

Authors:  Moustapha Cissé; Eric Duplan; Frédéric Checler
Journal:  Mol Med       Date:  2017-01-04       Impact factor: 6.354

Review 7.  DNA double-strand breaks as drivers of neural genomic change, function, and disease.

Authors:  Frederick W Alt; Bjoern Schwer
Journal:  DNA Repair (Amst)       Date:  2018-08-23

Review 8.  The Molecular Basis of Drug Addiction: Linking Epigenetic to Synaptic and Circuit Mechanisms.

Authors:  Eric J Nestler; Christian Lüscher
Journal:  Neuron       Date:  2019-04-03       Impact factor: 17.173

Review 9.  Druggable Transcriptional Networks in the Human Neurogenic Epigenome.

Authors:  Gerald A Higgins; Aaron M Williams; Alex S Ade; Hasan B Alam; Brian D Athey
Journal:  Pharmacol Rev       Date:  2019-10       Impact factor: 25.468

Review 10.  The Impact of Environmental Factors on 5-Hydroxymethylcytosine in the Brain.

Authors:  Joseph Kochmanski; Alison I Bernstein
Journal:  Curr Environ Health Rep       Date:  2020-06
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