Literature DB >> 27905423

Safikhani et al. reply.

Zhaleh Safikhani1,2, Nehme El-Hachem3, Petr Smirnov1, Mark Freeman1, Anna Goldenberg4,5, Nicolai J Birkbak6, Andrew H Beck7,8, Hugo J W L Aerts8,9,10, John Quackenbush9,11, Benjamin Haibe-Kains1,2,5,12.   

Abstract

Year:  2016        PMID: 27905423     DOI: 10.1038/nature20581

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


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  12 in total

1.  Comparison of the predicted and observed secondary structure of T4 phage lysozyme.

Authors:  B W Matthews
Journal:  Biochim Biophys Acta       Date:  1975-10-20

2.  Consistency in drug response profiling.

Authors:  John Patrick Mpindi; Bhagwan Yadav; Päivi Östling; Prson Gautam; Disha Malani; Astrid Murumägi; Akira Hirasawa; Sara Kangaspeska; Krister Wennerberg; Olli Kallioniemi; Tero Aittokallio
Journal:  Nature       Date:  2016-11-30       Impact factor: 49.962

3.  PharmacoGx: an R package for analysis of large pharmacogenomic datasets.

Authors:  Petr Smirnov; Zhaleh Safikhani; Nehme El-Hachem; Dong Wang; Adrian She; Catharina Olsen; Mark Freeman; Heather Selby; Deena M A Gendoo; Patrick Grossmann; Andrew H Beck; Hugo J W L Aerts; Mathieu Lupien; Anna Goldenberg; Benjamin Haibe-Kains
Journal:  Bioinformatics       Date:  2015-12-09       Impact factor: 6.937

4.  Drug response consistency in CCLE and CGP.

Authors:  Mehdi Bouhaddou; Matthew S DiStefano; Eric A Riesel; Emilce Carrasco; Hadassa Y Holzapfel; DeAnalisa C Jones; Gregory R Smith; Alan D Stern; Sulaiman S Somani; T Victoria Thompson; Marc R Birtwistle
Journal:  Nature       Date:  2016-11-30       Impact factor: 49.962

5.  Inconsistency in large pharmacogenomic studies.

Authors:  Benjamin Haibe-Kains; Nehme El-Hachem; Nicolai Juul Birkbak; Andrew C Jin; Andrew H Beck; Hugo J W L Aerts; John Quackenbush
Journal:  Nature       Date:  2013-11-27       Impact factor: 49.962

6.  Harnessing Connectivity in a Large-Scale Small-Molecule Sensitivity Dataset.

Authors:  Brinton Seashore-Ludlow; Matthew G Rees; Jaime H Cheah; Murat Cokol; Edmund V Price; Matthew E Coletti; Victor Jones; Nicole E Bodycombe; Christian K Soule; Joshua Gould; Benjamin Alexander; Ava Li; Philip Montgomery; Mathias J Wawer; Nurdan Kuru; Joanne D Kotz; C Suk-Yee Hon; Benito Munoz; Ted Liefeld; Vlado Dančík; Joshua A Bittker; Michelle Palmer; James E Bradner; Alykhan F Shamji; Paul A Clemons; Stuart L Schreiber
Journal:  Cancer Discov       Date:  2015-10-19       Impact factor: 39.397

7.  Systematic identification of genomic markers of drug sensitivity in cancer cells.

Authors:  Mathew J Garnett; Elena J Edelman; Sonja J Heidorn; Chris D Greenman; Anahita Dastur; King Wai Lau; Patricia Greninger; I Richard Thompson; Xi Luo; Jorge Soares; Qingsong Liu; Francesco Iorio; Didier Surdez; Li Chen; Randy J Milano; Graham R Bignell; Ah T Tam; Helen Davies; Jesse A Stevenson; Syd Barthorpe; Stephen R Lutz; Fiona Kogera; Karl Lawrence; Anne McLaren-Douglas; Xeni Mitropoulos; Tatiana Mironenko; Helen Thi; Laura Richardson; Wenjun Zhou; Frances Jewitt; Tinghu Zhang; Patrick O'Brien; Jessica L Boisvert; Stacey Price; Wooyoung Hur; Wanjuan Yang; Xianming Deng; Adam Butler; Hwan Geun Choi; Jae Won Chang; Jose Baselga; Ivan Stamenkovic; Jeffrey A Engelman; Sreenath V Sharma; Olivier Delattre; Julio Saez-Rodriguez; Nathanael S Gray; Jeffrey Settleman; P Andrew Futreal; Daniel A Haber; Michael R Stratton; Sridhar Ramaswamy; Ultan McDermott; Cyril H Benes
Journal:  Nature       Date:  2012-03-28       Impact factor: 49.962

8.  Ten simple rules for reproducible computational research.

Authors:  Geir Kjetil Sandve; Anton Nekrutenko; James Taylor; Eivind Hovig
Journal:  PLoS Comput Biol       Date:  2013-10-24       Impact factor: 4.475

9.  A Landscape of Pharmacogenomic Interactions in Cancer.

Authors:  Francesco Iorio; Theo A Knijnenburg; Daniel J Vis; Graham R Bignell; Michael P Menden; Michael Schubert; Nanne Aben; Emanuel Gonçalves; Syd Barthorpe; Howard Lightfoot; Thomas Cokelaer; Patricia Greninger; Ewald van Dyk; Han Chang; Heshani de Silva; Holger Heyn; Xianming Deng; Regina K Egan; Qingsong Liu; Tatiana Mironenko; Xeni Mitropoulos; Laura Richardson; Jinhua Wang; Tinghu Zhang; Sebastian Moran; Sergi Sayols; Maryam Soleimani; David Tamborero; Nuria Lopez-Bigas; Petra Ross-Macdonald; Manel Esteller; Nathanael S Gray; Daniel A Haber; Michael R Stratton; Cyril H Benes; Lodewyk F A Wessels; Julio Saez-Rodriguez; Ultan McDermott; Mathew J Garnett
Journal:  Cell       Date:  2016-07-07       Impact factor: 41.582

10.  Integrating heterogeneous drug sensitivity data from cancer pharmacogenomic studies.

Authors:  Nikita Pozdeyev; Minjae Yoo; Ryan Mackie; Rebecca E Schweppe; Aik Choon Tan; Bryan R Haugen
Journal:  Oncotarget       Date:  2016-08-09
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  4 in total

1.  Evaluating the consistency of large-scale pharmacogenomic studies.

Authors:  Raziur Rahman; Saugato Rahman Dhruba; Kevin Matlock; Carlos De-Niz; Souparno Ghosh; Ranadip Pal
Journal:  Brief Bioinform       Date:  2019-09-27       Impact factor: 11.622

2.  PATRI, a Genomics Data Integration Tool for Biomarker Discovery.

Authors:  G Ukmar; G E M Melloni; L Raddrizzani; P Rossi; S Di Bella; M R Pirchio; M Vescovi; A Leone; M Callari; M Cesarini; A Somaschini; G Della Vedova; M G Daidone; M Pettenella; A Isacchi; R Bosotti
Journal:  Biomed Res Int       Date:  2018-06-28       Impact factor: 3.411

3.  Understanding of researcher behavior is required to improve data reliability.

Authors:  Mark N Wass; Larry Ray; Martin Michaelis
Journal:  Gigascience       Date:  2019-05-01       Impact factor: 6.524

4.  Bayesian multi-source regression and monocyte-associated gene expression predict BCL-2 inhibitor resistance in acute myeloid leukemia.

Authors:  Brian S White; Suleiman A Khan; Mike J Mason; Muhammad Ammad-Ud-Din; Swapnil Potdar; Disha Malani; Heikki Kuusanmäki; Brian J Druker; Caroline Heckman; Olli Kallioniemi; Stephen E Kurtz; Kimmo Porkka; Cristina E Tognon; Jeffrey W Tyner; Tero Aittokallio; Krister Wennerberg; Justin Guinney
Journal:  NPJ Precis Oncol       Date:  2021-07-23
  4 in total

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