Literature DB >> 27905419

Drug response consistency in CCLE and CGP.

Mehdi Bouhaddou1, Matthew S DiStefano1, Eric A Riesel1, Emilce Carrasco1, Hadassa Y Holzapfel1, DeAnalisa C Jones1, Gregory R Smith1, Alan D Stern1, Sulaiman S Somani1, T Victoria Thompson1, Marc R Birtwistle1,2,3.   

Abstract

Entities:  

Year:  2016        PMID： 27905419      PMCID： PMC5554885          DOI： 10.1038/nature20580

Source DB:  PubMed          Journal:  Nature        ISSN： 0028-0836            Impact factor:   49.962


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  3 in total

1.  Inconsistency in large pharmacogenomic studies.

Authors:  Benjamin Haibe-Kains; Nehme El-Hachem; Nicolai Juul Birkbak; Andrew C Jin; Andrew H Beck; Hugo J W L Aerts; John Quackenbush
Journal:  Nature       Date:  2013-11-27       Impact factor: 49.962

2.  The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity.

Authors:  Jordi Barretina; Giordano Caponigro; Nicolas Stransky; Kavitha Venkatesan; Adam A Margolin; Sungjoon Kim; Christopher J Wilson; Joseph Lehár; Gregory V Kryukov; Dmitriy Sonkin; Anupama Reddy; Manway Liu; Lauren Murray; Michael F Berger; John E Monahan; Paula Morais; Jodi Meltzer; Adam Korejwa; Judit Jané-Valbuena; Felipa A Mapa; Joseph Thibault; Eva Bric-Furlong; Pichai Raman; Aaron Shipway; Ingo H Engels; Jill Cheng; Guoying K Yu; Jianjun Yu; Peter Aspesi; Melanie de Silva; Kalpana Jagtap; Michael D Jones; Li Wang; Charles Hatton; Emanuele Palescandolo; Supriya Gupta; Scott Mahan; Carrie Sougnez; Robert C Onofrio; Ted Liefeld; Laura MacConaill; Wendy Winckler; Michael Reich; Nanxin Li; Jill P Mesirov; Stacey B Gabriel; Gad Getz; Kristin Ardlie; Vivien Chan; Vic E Myer; Barbara L Weber; Jeff Porter; Markus Warmuth; Peter Finan; Jennifer L Harris; Matthew Meyerson; Todd R Golub; Michael P Morrissey; William R Sellers; Robert Schlegel; Levi A Garraway
Journal:  Nature       Date:  2012-03-28       Impact factor: 49.962

3.  Systematic identification of genomic markers of drug sensitivity in cancer cells.

Authors:  Mathew J Garnett; Elena J Edelman; Sonja J Heidorn; Chris D Greenman; Anahita Dastur; King Wai Lau; Patricia Greninger; I Richard Thompson; Xi Luo; Jorge Soares; Qingsong Liu; Francesco Iorio; Didier Surdez; Li Chen; Randy J Milano; Graham R Bignell; Ah T Tam; Helen Davies; Jesse A Stevenson; Syd Barthorpe; Stephen R Lutz; Fiona Kogera; Karl Lawrence; Anne McLaren-Douglas; Xeni Mitropoulos; Tatiana Mironenko; Helen Thi; Laura Richardson; Wenjun Zhou; Frances Jewitt; Tinghu Zhang; Patrick O'Brien; Jessica L Boisvert; Stacey Price; Wooyoung Hur; Wanjuan Yang; Xianming Deng; Adam Butler; Hwan Geun Choi; Jae Won Chang; Jose Baselga; Ivan Stamenkovic; Jeffrey A Engelman; Sreenath V Sharma; Olivier Delattre; Julio Saez-Rodriguez; Nathanael S Gray; Jeffrey Settleman; P Andrew Futreal; Daniel A Haber; Michael R Stratton; Sridhar Ramaswamy; Ultan McDermott; Cyril H Benes
Journal:  Nature       Date:  2012-03-28       Impact factor: 49.962
  3 in total
  21 in total

1.  Safikhani et al. reply.

Authors:  Zhaleh Safikhani; Nehme El-Hachem; Petr Smirnov; Mark Freeman; Anna Goldenberg; Nicolai J Birkbak; Andrew H Beck; Hugo J W L Aerts; John Quackenbush; Benjamin Haibe-Kains
Journal:  Nature       Date:  2016-11-30       Impact factor: 49.962

2.  Safikhani et al. reply.

Authors:  Zhaleh Safikhani; Nehme El-Hachem; Petr Smirnov; Mark Freeman; Anna Goldenberg; Nicolai J Birkbak; Andrew H Beck; Hugo J W L Aerts; John Quackenbush; Benjamin Haibe-Kains
Journal:  Nature       Date:  2016-11-30       Impact factor: 49.962

3.  Evaluating the consistency of large-scale pharmacogenomic studies.

Authors:  Raziur Rahman; Saugato Rahman Dhruba; Kevin Matlock; Carlos De-Niz; Souparno Ghosh; Ranadip Pal
Journal:  Brief Bioinform       Date:  2019-09-27       Impact factor: 11.622

4.  Revisiting inconsistency in large pharmacogenomic studies.

Authors:  Zhaleh Safikhani; Petr Smirnov; Mark Freeman; Nehme El-Hachem; Adrian She; Quevedo Rene; Anna Goldenberg; Nicolai J Birkbak; Christos Hatzis; Leming Shi; Andrew H Beck; Hugo J W L Aerts; John Quackenbush; Benjamin Haibe-Kains
Journal:  F1000Res       Date:  2016-09-16

5.  Illuminating lncRNA Function Through Target Prediction.

Authors:  Hua-Sheng Chiu; Sonal Somvanshi; Ting-Wen Chen; Pavel Sumazin
Journal:  Methods Mol Biol       Date:  2021

Review 6.  Drug sensitivity prediction from cell line-based pharmacogenomics data: guidelines for developing machine learning models.

Authors:  Hossein Sharifi-Noghabi; Soheil Jahangiri-Tazehkand; Petr Smirnov; Casey Hon; Anthony Mammoliti; Sisira Kadambat Nair; Arvind Singh Mer; Martin Ester; Benjamin Haibe-Kains
Journal:  Brief Bioinform       Date:  2021-11-05       Impact factor: 13.994

7.  CRISPR/Cas9 Genome Editing of Epidermal Growth Factor Receptor Sufficiently Abolished Oncogenicity in Anaplastic Thyroid Cancer.

Authors:  Li-Chi Huang; Ka-Wai Tam; Wei-Ni Liu; Chun-Yu Lin; Kai-Wen Hsu; Wen-Shyang Hsieh; Wei-Ming Chi; Ai-Wei Lee; Jinn-Moon Yang; Ching-Ling Lin; Chia-Hwa Lee
Journal:  Dis Markers       Date:  2018-04-12       Impact factor: 3.434

8.  In vitro modeling of hepatocellular carcinoma molecular subtypes for anti-cancer drug assessment.

Authors:  Hadassa Hirschfield; C Billie Bian; Takaaki Higashi; Shigeki Nakagawa; Tizita Z Zeleke; Venugopalan D Nair; Bryan C Fuchs; Yujin Hoshida
Journal:  Exp Mol Med       Date:  2018-01-05       Impact factor: 12.153

9.  Quantitative In Vivo Analyses Reveal a Complex Pharmacogenomic Landscape in Lung Adenocarcinoma.

Authors:  Chuan Li; Wen-Yang Lin; Monte M Winslow; Hira Rizvi; Hongchen Cai; Christopher D McFarland; Zoe N Rogers; Maryam Yousefi; Ian P Winters; Charles M Rudin; Dmitri A Petrov
Journal:  Cancer Res       Date:  2021-07-02       Impact factor: 12.701

10.  Analysis of copy number loss of the ErbB4 receptor tyrosine kinase in glioblastoma.

Authors:  DeAnalisa C Jones; Adriana Scanteianu; Matthew DiStefano; Mehdi Bouhaddou; Marc R Birtwistle
Journal:  PLoS One       Date:  2018-01-17       Impact factor: 3.240
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