Literature DB >> 27886593

The evolution of microRNAs in plants.

Jie Cui1, Chenjiang You2, Xuemei Chen3.   

Abstract

MicroRNAs (miRNAs) are a central player in post-transcriptional regulation of gene expression and are involved in numerous biological processes in eukaryotes. Knowledge of the origins and divergence of miRNAs paves the way for a better understanding of the complexity of the regulatory networks that they participate in. The biogenesis, degradation, and regulatory activities of miRNAs are relatively better understood, but the evolutionary history of miRNAs still needs more exploration. Inverted duplication of target genes, random hairpin sequences and small transposable elements constitute three main models that explain the origination of miRNA genes (MIR). Both inter-species and intra-species divergence of miRNAs exhibits functional adaptation and adaptation to changing environments in evolution. Here we summarize recent progress in studies on the evolution of MIR and related genes.
Copyright © 2016 Elsevier Ltd. All rights reserved.

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Year:  2016        PMID: 27886593      PMCID: PMC5342909          DOI: 10.1016/j.pbi.2016.11.006

Source DB:  PubMed          Journal:  Curr Opin Plant Biol        ISSN: 1369-5266            Impact factor:   7.834


  49 in total

Review 1.  RNAi in Plants: An Argonaute-Centered View.

Authors:  Xiaofeng Fang; Yijun Qi
Journal:  Plant Cell       Date:  2016-02-11       Impact factor: 11.277

2.  Evolution of Arabidopsis thaliana microRNAs from random sequences.

Authors:  Felipe Fenselau de Felippes; Korbinian Schneeberger; Tobias Dezulian; Daniel H Huson; Detlef Weigel
Journal:  RNA       Date:  2008-10-24       Impact factor: 4.942

3.  Adaptive evolution and functional innovation of Populus-specific recently evolved microRNAs.

Authors:  Jianbo Xie; Xiaohui Yang; Yuepeng Song; Qingzhang Du; Ying Li; Jinhui Chen; Deqiang Zhang
Journal:  New Phytol       Date:  2016-06-09       Impact factor: 10.151

4.  Sample sequencing of vascular plants demonstrates widespread conservation and divergence of microRNAs.

Authors:  Ricardo A Chávez Montes; Flor de Fátima Rosas-Cárdenas; Emanuele De Paoli; Monica Accerbi; Linda A Rymarquis; Gayathri Mahalingam; Nayelli Marsch-Martínez; Blake C Meyers; Pamela J Green; Stefan de Folter
Journal:  Nat Commun       Date:  2014-04-23       Impact factor: 14.919

5.  MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana.

Authors:  Noah Fahlgren; Sanjuro Jogdeo; Kristin D Kasschau; Christopher M Sullivan; Elisabeth J Chapman; Sascha Laubinger; Lisa M Smith; Mark Dasenko; Scott A Givan; Detlef Weigel; James C Carrington
Journal:  Plant Cell       Date:  2010-04-20       Impact factor: 11.277

6.  Dual coding of siRNAs and miRNAs by plant transposable elements.

Authors:  Jittima Piriyapongsa; I King Jordan
Journal:  RNA       Date:  2008-03-26       Impact factor: 4.942

7.  Birth and expression evolution of mammalian microRNA genes.

Authors:  Julien Meunier; Frédéric Lemoine; Magali Soumillon; Angélica Liechti; Manuela Weier; Katerina Guschanski; Haiyang Hu; Philipp Khaitovich; Henrik Kaessmann
Journal:  Genome Res       Date:  2012-10-03       Impact factor: 9.043

8.  ARGONAUTE10 and ARGONAUTE1 regulate the termination of floral stem cells through two microRNAs in Arabidopsis.

Authors:  Lijuan Ji; Xigang Liu; Jun Yan; Wenming Wang; Rae Eden Yumul; Yun Ju Kim; Thanh Theresa Dinh; Jun Liu; Xia Cui; Binglian Zheng; Manu Agarwal; Chunyan Liu; Xiaofeng Cao; Guiliang Tang; Xuemei Chen
Journal:  PLoS Genet       Date:  2011-03-31       Impact factor: 5.917

9.  The liverwort Pellia endiviifolia shares microtranscriptomic traits that are common to green algae and land plants.

Authors:  Sylwia Alaba; Pawel Piszczalka; Halina Pietrykowska; Andrzej M Pacak; Izabela Sierocka; Przemyslaw W Nuc; Kashmir Singh; Patrycja Plewka; Aleksandra Sulkowska; Artur Jarmolowski; Wojciech M Karlowski; Zofia Szweykowska-Kulinska
Journal:  New Phytol       Date:  2014-12-19       Impact factor: 10.151

10.  Most microRNAs in the single-cell alga Chlamydomonas reinhardtii are produced by Dicer-like 3-mediated cleavage of introns and untranslated regions of coding RNAs.

Authors:  Adrian A Valli; Bruno A C M Santos; Silvia Hnatova; Andrew R Bassett; Attila Molnar; Betty Y Chung; David C Baulcombe
Journal:  Genome Res       Date:  2016-03-11       Impact factor: 9.043

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  44 in total

1.  Characterization on the conservation and diversification of miRNA156 gene family from lower to higher plant species based on phylogenetic analysis at the whole genomic level.

Authors:  Chen Wang; Qinglian Wang; Xudong Zhu; Menjie Cui; Haifeng Jia; Wenying Zhang; Wei Tang; Xiangpeng Leng; Wenbiao Shen
Journal:  Funct Integr Genomics       Date:  2019-06-07       Impact factor: 3.410

2.  RNA Interference: Story and Mechanisms.

Authors:  Mouldy Sioud
Journal:  Methods Mol Biol       Date:  2021

3.  Evolutionary Footprints Reveal Insights into Plant MicroRNA Biogenesis.

Authors:  Uciel Chorostecki; Belen Moro; Arantxa M L Rojas; Juan M Debernardi; Arnaldo L Schapire; Cedric Notredame; Javier F Palatnik
Journal:  Plant Cell       Date:  2017-05-26       Impact factor: 11.277

4.  De novo origination of MIRNAs through generation of short inverted repeats in target genes.

Authors:  Shanfa Lu
Journal:  RNA Biol       Date:  2019-03-30       Impact factor: 4.652

5.  Characterization of maize miRNAs responsive to maize Iranian mosaic virus infection.

Authors:  Abozar Ghorbani; Keramatollah Izadpanah; Ahmad Tahmasebi; Alireza Afsharifar; Ali Moghadam; Ralf G Dietzgen
Journal:  3 Biotech       Date:  2022-02-12       Impact factor: 2.406

6.  Serrate-Associated Protein 1, a splicing-related protein, promotes miRNA biogenesis in Arabidopsis.

Authors:  Mu Li; Huihui Yu; Kan Liu; Weilong Yang; Bangjun Zhou; Lu Gan; Shengjun Li; Chi Zhang; Bin Yu
Journal:  New Phytol       Date:  2021-09-16       Impact factor: 10.151

Review 7.  Roles of RNA silencing in viral and non-viral plant immunity and in the crosstalk between disease resistance systems.

Authors:  Sara Lopez-Gomollon; David C Baulcombe
Journal:  Nat Rev Mol Cell Biol       Date:  2022-06-16       Impact factor: 113.915

8.  Evolution of small RNA expression following hybridization and allopolyploidization: insights from Spartina species (Poaceae, Chloridoideae).

Authors:  Armand Cavé-Radet; Delphine Giraud; Oscar Lima; Abdelhak El Amrani; Malika Aïnouche; Armel Salmon
Journal:  Plant Mol Biol       Date:  2019-11-20       Impact factor: 4.076

9.  Prevalent cytidylation and uridylation of precursor miRNAs in Arabidopsis.

Authors:  Jianbo Song; Xiaoyan Wang; Bo Song; Lei Gao; Xiaowei Mo; Luming Yue; Haiqi Yang; Jiayun Lu; Guodong Ren; Beixin Mo; Xuemei Chen
Journal:  Nat Plants       Date:  2019-12-02       Impact factor: 15.793

10.  Global Analysis of Small RNA Dynamics during Seed Development of Picea glauca and Arabidopsis thaliana Populations Reveals Insights on their Evolutionary Trajectories.

Authors:  Yang Liu; Yousry A El-Kassaby
Journal:  Front Plant Sci       Date:  2017-10-04       Impact factor: 5.753

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