| Literature DB >> 27840723 |
Perumal Kathiravan1, Thangavelu Balakrishnan1, Perumal Venkatesan2, Kandasamy Ramamurthi3, María Judith Percino2, Subbiah Thamotharan4.
Abstract
The title mol-ecular salt, C9H12NO4+·Cl-·C9H11NO4, is isotypic with that of the bromide counterpart [Kathiravan et al. (2016 ▸). Acta Cryst. E72, 1544-1548]. The title salt is a second monoclinic polymorph of the l-dopa HCl structure reported earlier in the monoclinic space group P21 [Jandacek & Earle (1971 ▸). Acta Cryst. B27, 841-845; Mostad & Rømming (1974 ▸). Acta Chemica Scand. B28, 1161-1168]. In the title compound, monoclinic space group I2, one of the dopa mol-ecules has a positive charge with a protonated α-amino group and the α-carb-oxy-lic acid group uncharged, while the second dopa mol-ecule has a neutral charge, the α-amino group is protonated and the α-carb-oxy-lic acid is deprotonated. In the previously reported form, a single dopa mol-ecule is observed in which the α-amino group is protonated and the α-carb-oxy-lic acid group is uncharged. The invariant and variations of various types of inter-molecular inter-actions present in these two forms of dopa HCl structures are discussed with the aid of two-dimensional fingerprint plots.Entities:
Keywords: Hirshfeld surfaces; crystal structure; cyclic N—H⋯Cl hydrogen bonds; l-dopa
Year: 2016 PMID: 27840723 PMCID: PMC5095848 DOI: 10.1107/S2056989016016789
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The molecular structure of the title molecular salt, (II), showing the atom labelling scheme [symmetry code: ($) −x + 3, y, −z + 1]. Displacement ellipsoids are drawn at the 50% probability level.
Figure 2Structural superimposition of cationic dopa molecules in (II) (red), bromide counterpart (green) and form (I) l-dopa HCl (blue).
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O1—H1 | 0.82 | 1.98 | 2.746 (2) | 155 |
| O2—H2 | 0.82 | 2.33 | 2.999 (2) | 140 |
| O2—H2 | 0.82 | 2.16 | 2.8730 (8) | 146 |
| O4—H4 | 0.90 (3) | 1.50 (3) | 2.373 (2) | 161 (8) |
| N1—H1 | 0.91 (3) | 2.35 (4) | 3.249 (2) | 167 (3) |
| N1—H1 | 0.89 (3) | 2.31 (3) | 3.178 (2) | 166 (2) |
| N1—H1 | 0.90 (3) | 1.93 (3) | 2.7901 (19) | 160 (3) |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .
Figure 3Crystal packing of the title molecular salt, (II), viewed along the b axis. The hydrogen bonds are shown as dashed lines (see Table 1 ▸), and C-bound H atoms have been omitted for clarity.
Figure 4Part of the crystal structure of (II) showing the (18) motifs formed through N—H⋯O and O—H⋯O hydrogen bonds (see Table 1 ▸).
Figure 5(a) Part of the crystal structure of (II) showing the (8) motif formed by intermolecular N—H⋯Cl hydrogen bonds (see Table 1 ▸), and (b) part of the crystal structure of form (I) dopa HCl showing the cyclic motif formed by N—H⋯Cl and O—H⋯Cl hydrogen bonds.
Figure 6Adjacent dopa layers are interlinked by side chain–side chain interactions in (II) through intermolecular O—H⋯O hydrogen bonds (see Table 1 ▸).
Figure 7(a) Two different views of Hirshfeld surfaces of dimeric dopa molecules along with a Cl− anion, (b) two-dimensional fingerprint plots for complete unit of dopa and (c) anionic Cl−. Various types of contacts are indicated.
Experimental details
| Crystal data | |
| Chemical formula | C9H12NO4 +·Cl−·C9H11NO4 |
|
| 430.83 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 293 |
|
| 6.1768 (3), 5.4349 (3), 28.7651 (16) |
| β (°) | 98.140 (4) |
|
| 955.92 (9) |
|
| 2 |
| Radiation type | Mo |
| μ (mm−1) | 0.25 |
| Crystal size (mm) | 0.30 × 0.25 × 0.20 |
| Data collection | |
| Diffractometer | Bruker Kappa APEXII CCD |
| Absorption correction | Multi-scan ( |
|
| 0.927, 0.959 |
| No. of measured, independent and observed [ | 14303, 2982, 2623 |
|
| 0.024 |
| (sin θ/λ)max (Å−1) | 0.777 |
| Refinement | |
|
| 0.035, 0.094, 1.05 |
| No. of reflections | 2982 |
| No. of parameters | 151 |
| No. of restraints | 2 |
| H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
| Δρmax, Δρmin (e Å−3) | 0.57, −0.21 |
| Absolute structure | Flack |
| Absolute structure parameter | 0.033 (17) |
Computer programs: APEX2, SAINT and XPREP (Bruker, 2004 ▸), Mercury (Macrae et al., 2006 ▸), SHELXL2014/7 (Sheldrick, 2015 ▸) and publCIF (Westrip, 2010 ▸). Structure solution – isomorphous replacement.
| C9H12NO4+·Cl−·C9H11NO4 | |
| Monoclinic, | Mo |
| Cell parameters from 7161 reflections | |
| θ = 3.8–31.1° | |
| µ = 0.25 mm−1 | |
| β = 98.140 (4)° | |
| Block, colourless | |
| 0.30 × 0.25 × 0.20 mm |
| Bruker Kappa APEXII CCD diffractometer | 2623 reflections with |
| Radiation source: fine-focus sealed tube | |
| ω and φ scan | θmax = 33.5°, θmin = 2.9° |
| Absorption correction: multi-scan (SADABS; Bruker, 2004) | |
| 14303 measured reflections | |
| 2982 independent reflections |
| Refinement on | 2 restraints |
| Least-squares matrix: full | Hydrogen site location: mixed |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max < 0.001 | |
| 2982 reflections | Δρmax = 0.57 e Å−3 |
| 151 parameters | Δρmin = −0.21 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refined as a two-component inversion twin |
| Occ. (<1) | |||||
| O1 | 0.3951 (2) | 1.2691 (3) | 0.33134 (6) | 0.0290 (3) | |
| H1O | 0.4509 | 1.3678 | 0.3510 | 0.044* | |
| O2 | 0.3026 (2) | 0.9556 (3) | 0.26334 (5) | 0.0299 (3) | |
| H2O | 0.2767 | 0.8411 | 0.2448 | 0.045* | |
| O3 | 1.4771 (2) | 0.5509 (3) | 0.41112 (5) | 0.0329 (4) | |
| O4 | 1.32315 (19) | 0.6323 (4) | 0.47766 (4) | 0.0276 (3) | |
| H4O | 1.467 (5) | 0.623 (16) | 0.489 (3) | 0.07 (2)* | 0.5 |
| N1 | 0.9230 (2) | 0.6219 (4) | 0.44032 (5) | 0.0192 (3) | |
| H1A | 0.937 (4) | 0.751 (7) | 0.4608 (11) | 0.038 (8)* | |
| H1B | 0.933 (3) | 0.498 (5) | 0.4608 (8) | 0.013 (5)* | |
| H1C | 0.784 (5) | 0.629 (7) | 0.4261 (10) | 0.043 (7)* | |
| C1 | 0.8763 (3) | 0.8689 (4) | 0.34670 (6) | 0.0203 (4) | |
| C2 | 0.7324 (3) | 1.0590 (4) | 0.35439 (7) | 0.0216 (4) | |
| H2 | 0.7691 | 1.1672 | 0.3793 | 0.026* | |
| C3 | 0.5418 (3) | 1.0860 (3) | 0.32596 (6) | 0.0202 (4) | |
| C4 | 0.4932 (3) | 0.9175 (4) | 0.29009 (6) | 0.0207 (4) | |
| C5 | 0.6340 (3) | 0.7289 (4) | 0.28237 (7) | 0.0237 (4) | |
| H5 | 0.5961 | 0.6194 | 0.2577 | 0.028* | |
| C6 | 0.8254 (3) | 0.7042 (4) | 0.31046 (7) | 0.0238 (4) | |
| H6 | 0.9217 | 0.5784 | 0.3056 | 0.029* | |
| C7 | 1.0881 (3) | 0.8448 (4) | 0.37635 (7) | 0.0231 (4) | |
| H7A | 1.1137 | 0.9888 | 0.3963 | 0.028* | |
| H7B | 1.2030 | 0.8373 | 0.3566 | 0.028* | |
| C8 | 1.0974 (2) | 0.6136 (4) | 0.40704 (6) | 0.0170 (3) | |
| H8 | 1.0707 | 0.4692 | 0.3866 | 0.020* | |
| C9 | 1.3196 (3) | 0.5949 (4) | 0.43384 (6) | 0.0193 (4) | |
| Cl1 | 1.0000 | 0.12970 (14) | 0.5000 | 0.0428 (2) |
| O1 | 0.0242 (7) | 0.0254 (7) | 0.0347 (8) | 0.0052 (6) | −0.0053 (6) | −0.0063 (6) |
| O2 | 0.0210 (6) | 0.0325 (8) | 0.0314 (8) | 0.0000 (6) | −0.0127 (5) | −0.0043 (6) |
| O3 | 0.0148 (5) | 0.0560 (11) | 0.0263 (7) | 0.0060 (6) | −0.0025 (5) | −0.0092 (7) |
| O4 | 0.0137 (5) | 0.0486 (9) | 0.0186 (6) | 0.0019 (7) | −0.0049 (4) | −0.0034 (7) |
| N1 | 0.0122 (6) | 0.0258 (8) | 0.0185 (7) | −0.0008 (6) | −0.0015 (5) | 0.0018 (8) |
| C1 | 0.0176 (7) | 0.0246 (9) | 0.0175 (8) | −0.0016 (7) | −0.0022 (6) | 0.0054 (7) |
| C2 | 0.0201 (7) | 0.0237 (9) | 0.0192 (8) | −0.0031 (7) | −0.0028 (6) | −0.0007 (7) |
| C3 | 0.0180 (7) | 0.0205 (10) | 0.0210 (8) | −0.0009 (7) | −0.0007 (6) | 0.0025 (7) |
| C4 | 0.0178 (7) | 0.0240 (9) | 0.0188 (8) | −0.0028 (7) | −0.0029 (6) | 0.0025 (7) |
| C5 | 0.0240 (9) | 0.0258 (10) | 0.0197 (9) | −0.0012 (8) | −0.0021 (7) | −0.0029 (7) |
| C6 | 0.0216 (8) | 0.0265 (10) | 0.0224 (9) | 0.0041 (7) | 0.0003 (7) | 0.0007 (7) |
| C7 | 0.0151 (7) | 0.0291 (10) | 0.0233 (9) | −0.0042 (7) | −0.0038 (6) | 0.0065 (8) |
| C8 | 0.0122 (6) | 0.0215 (8) | 0.0161 (7) | −0.0002 (7) | −0.0022 (5) | −0.0005 (7) |
| C9 | 0.0130 (6) | 0.0237 (10) | 0.0197 (8) | 0.0003 (7) | −0.0033 (5) | −0.0012 (7) |
| Cl1 | 0.0677 (5) | 0.0189 (3) | 0.0390 (4) | 0.000 | −0.0016 (4) | 0.000 |
| O1—C3 | 1.369 (2) | C1—C7 | 1.463 (2) |
| O1—H1O | 0.8200 | C2—C3 | 1.343 (2) |
| O2—C4 | 1.329 (2) | C2—H2 | 0.9300 |
| O2—H2O | 0.8200 | C3—C4 | 1.380 (3) |
| O3—C9 | 1.269 (2) | C4—C5 | 1.382 (3) |
| O4—C9 | 1.274 (2) | C5—C6 | 1.341 (3) |
| O4—H4O | 0.90 (3) | C5—H5 | 0.9300 |
| N1—C8 | 1.540 (2) | C6—H6 | 0.9300 |
| N1—H1A | 0.91 (3) | C7—C8 | 1.532 (3) |
| N1—H1B | 0.89 (3) | C7—H7A | 0.9700 |
| N1—H1C | 0.90 (3) | C7—H7B | 0.9700 |
| C1—C6 | 1.376 (3) | C8—C9 | 1.479 (2) |
| C1—C2 | 1.401 (3) | C8—H8 | 0.9800 |
| C3—O1—H1O | 109.5 | C6—C5—C4 | 119.90 (18) |
| C4—O2—H2O | 109.5 | C6—C5—H5 | 120.0 |
| C9—O4—H4O | 103 (5) | C4—C5—H5 | 120.0 |
| C8—N1—H1A | 114.6 (18) | C5—C6—C1 | 118.60 (18) |
| C8—N1—H1B | 113.7 (14) | C5—C6—H6 | 120.7 |
| H1A—N1—H1B | 99 (2) | C1—C6—H6 | 120.7 |
| C8—N1—H1C | 115.1 (18) | C1—C7—C8 | 111.52 (15) |
| H1A—N1—H1C | 105 (3) | C1—C7—H7A | 109.3 |
| H1B—N1—H1C | 108 (3) | C8—C7—H7A | 109.3 |
| C6—C1—C2 | 121.15 (15) | C1—C7—H7B | 109.3 |
| C6—C1—C7 | 118.24 (18) | C8—C7—H7B | 109.3 |
| C2—C1—C7 | 120.58 (17) | H7A—C7—H7B | 108.0 |
| C3—C2—C1 | 120.37 (17) | C9—C8—C7 | 108.25 (15) |
| C3—C2—H2 | 119.8 | C9—C8—N1 | 110.92 (13) |
| C1—C2—H2 | 119.8 | C7—C8—N1 | 111.19 (16) |
| C2—C3—O1 | 123.21 (17) | C9—C8—H8 | 108.8 |
| C2—C3—C4 | 117.50 (17) | C7—C8—H8 | 108.8 |
| O1—C3—C4 | 119.29 (15) | N1—C8—H8 | 108.8 |
| O2—C4—C3 | 114.24 (17) | O3—C9—O4 | 129.22 (14) |
| O2—C4—C5 | 123.27 (17) | O3—C9—C8 | 117.83 (15) |
| C3—C4—C5 | 122.47 (16) | O4—C9—C8 | 112.93 (14) |
| C6—C1—C2—C3 | −0.8 (3) | C2—C1—C6—C5 | 0.0 (3) |
| C7—C1—C2—C3 | 177.45 (18) | C7—C1—C6—C5 | −178.29 (19) |
| C1—C2—C3—O1 | −179.42 (18) | C6—C1—C7—C8 | −69.7 (2) |
| C1—C2—C3—C4 | 1.3 (3) | C2—C1—C7—C8 | 112.0 (2) |
| C2—C3—C4—O2 | −179.88 (17) | C1—C7—C8—C9 | 176.83 (16) |
| O1—C3—C4—O2 | 0.8 (3) | C1—C7—C8—N1 | −61.1 (2) |
| C2—C3—C4—C5 | −1.1 (3) | C7—C8—C9—O3 | −67.7 (2) |
| O1—C3—C4—C5 | 179.57 (18) | N1—C8—C9—O3 | 170.10 (19) |
| O2—C4—C5—C6 | 179.00 (19) | C7—C8—C9—O4 | 110.8 (2) |
| C3—C4—C5—C6 | 0.4 (3) | N1—C8—C9—O4 | −11.4 (3) |
| C4—C5—C6—C1 | 0.2 (3) |
| H··· | ||||
| O1—H1 | 0.82 | 1.98 | 2.746 (2) | 155 |
| O2—H2 | 0.82 | 2.33 | 2.999 (2) | 140 |
| O2—H2 | 0.82 | 2.16 | 2.8730 (8) | 146 |
| O4—H4 | 0.90 (3) | 1.50 (3) | 2.373 (2) | 161 (8) |
| N1—H1 | 0.91 (3) | 2.35 (4) | 3.249 (2) | 167 (3) |
| N1—H1 | 0.89 (3) | 2.31 (3) | 3.178 (2) | 166 (2) |
| N1—H1 | 0.90 (3) | 1.93 (3) | 2.7901 (19) | 160 (3) |