| Literature DB >> 23476439 |
T Balakrishnan1, K Ramamurthi, S Thamotharan.
Abstract
In the title compound, C2H5NO2·C8H6O4, the glycine mol-ecule exists as a zwitterion (2-aza-niumyl-ethano-ate) with a positively charged amino group and a negatively charged carboxyl-ate group. In the crystal, N-H⋯O and O-H⋯O hydrogen bonds link the components into layers parallel to the ab plane. The central part of each layer is composed of hydrogen-bonded glycine zwitterions, while phthalic acid mol-ecules inter-act with the zwitterions in such a way that benzene rings protrude up and down from the layer.Entities:
Year: 2012 PMID: 23476439 PMCID: PMC3588298 DOI: 10.1107/S160053681204977X
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C2H5NO2·C8H6O4 | |
| Orthorhombic, | Mo |
| Hall symbol: -P 2ac 2ab | Cell parameters from 8000 reflections |
| θ = 2.6–26.1° | |
| µ = 0.13 mm−1 | |
| Block, colourless | |
| 0.53 × 0.46 × 0.30 mm |
| Stoe IPDS diffractometer | 1597 reflections with |
| Radiation source: fine-focus sealed tube | |
| Graphite monochromator | θmax = 26.0°, θmin = 3.1° |
| Detector resolution: 0.81Å pixels mm-1 | |
| phi rotation scans | |
| 15716 measured reflections | |
| 2077 independent reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max < 0.001 | |
| 2077 reflections | Δρmax = 0.22 e Å−3 |
| 175 parameters | Δρmin = −0.19 e Å−3 |
| 0 restraints | Extinction correction: |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0086 (15) |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| O3 | −0.06389 (12) | 0.23293 (9) | 0.08480 (4) | 0.0293 (3) | |
| O4 | −0.00401 (15) | 0.40181 (9) | 0.12875 (4) | 0.0374 (3) | |
| H4O | −0.058 (3) | 0.435 (2) | 0.0959 (11) | 0.075 (7)* | |
| O5 | 0.00354 (13) | −0.05643 (9) | 0.12213 (4) | 0.0365 (3) | |
| O6 | 0.19779 (12) | 0.05907 (9) | 0.08314 (4) | 0.0311 (3) | |
| H6O | 0.205 (3) | −0.008 (2) | 0.0572 (10) | 0.072 (6)* | |
| C3 | 0.06342 (15) | 0.22668 (12) | 0.17621 (5) | 0.0238 (3) | |
| C4 | 0.10175 (15) | 0.10660 (12) | 0.17542 (5) | 0.0242 (3) | |
| C5 | 0.15369 (17) | 0.05214 (13) | 0.22514 (6) | 0.0294 (3) | |
| H5 | 0.1795 | −0.0296 | 0.2247 | 0.035* | |
| C6 | 0.16855 (19) | 0.11483 (14) | 0.27541 (6) | 0.0347 (3) | |
| H6 | 0.2054 | 0.0764 | 0.3091 | 0.042* | |
| C7 | 0.12967 (18) | 0.23317 (14) | 0.27639 (6) | 0.0336 (3) | |
| H7 | 0.1387 | 0.2765 | 0.3108 | 0.040* | |
| C8 | 0.07751 (17) | 0.28854 (13) | 0.22713 (6) | 0.0278 (3) | |
| H8 | 0.0508 | 0.3701 | 0.2280 | 0.033* | |
| C9 | −0.00603 (16) | 0.28671 (12) | 0.12521 (5) | 0.0249 (3) | |
| C10 | 0.09312 (16) | 0.03014 (11) | 0.12370 (5) | 0.0247 (3) | |
| O1 | 0.75187 (11) | 0.11587 (8) | −0.01838 (4) | 0.0269 (2) | |
| O2 | 0.65409 (12) | −0.01881 (8) | 0.04157 (4) | 0.0317 (3) | |
| N1 | 0.59761 (16) | 0.29647 (10) | 0.03063 (5) | 0.0258 (3) | |
| H1A | 0.543 (2) | 0.3538 (16) | 0.0511 (8) | 0.042 (5)* | |
| H1B | 0.560 (2) | 0.2998 (17) | −0.0061 (9) | 0.051 (5)* | |
| H1C | 0.704 (3) | 0.3178 (16) | 0.0329 (8) | 0.043 (5)* | |
| C1 | 0.66689 (15) | 0.08474 (11) | 0.02398 (5) | 0.0226 (3) | |
| C2 | 0.57097 (16) | 0.17890 (11) | 0.05551 (6) | 0.0249 (3) | |
| H2A | 0.4497 | 0.1599 | 0.0546 | 0.030* | |
| H2B | 0.6072 | 0.1798 | 0.0958 | 0.030* |
| O3 | 0.0348 (5) | 0.0245 (5) | 0.0286 (5) | −0.0013 (4) | −0.0052 (4) | −0.0042 (4) |
| O4 | 0.0615 (7) | 0.0201 (6) | 0.0307 (6) | −0.0003 (5) | −0.0090 (5) | −0.0012 (4) |
| O5 | 0.0476 (6) | 0.0296 (6) | 0.0322 (6) | −0.0152 (5) | 0.0070 (4) | −0.0067 (4) |
| O6 | 0.0368 (5) | 0.0226 (5) | 0.0338 (5) | −0.0036 (4) | 0.0124 (4) | −0.0055 (4) |
| C3 | 0.0231 (6) | 0.0230 (7) | 0.0251 (7) | −0.0023 (5) | 0.0022 (5) | −0.0020 (5) |
| C4 | 0.0215 (6) | 0.0229 (7) | 0.0280 (7) | −0.0032 (5) | 0.0035 (5) | −0.0018 (5) |
| C5 | 0.0318 (7) | 0.0250 (7) | 0.0315 (7) | 0.0004 (6) | 0.0006 (5) | 0.0024 (6) |
| C6 | 0.0398 (8) | 0.0363 (9) | 0.0279 (7) | −0.0013 (6) | −0.0036 (6) | 0.0047 (6) |
| C7 | 0.0408 (8) | 0.0355 (9) | 0.0245 (7) | −0.0047 (7) | −0.0017 (6) | −0.0044 (6) |
| C8 | 0.0313 (7) | 0.0239 (7) | 0.0283 (7) | −0.0016 (5) | 0.0009 (5) | −0.0055 (5) |
| C9 | 0.0269 (6) | 0.0213 (7) | 0.0266 (7) | −0.0011 (5) | 0.0014 (5) | −0.0026 (5) |
| C10 | 0.0278 (6) | 0.0186 (7) | 0.0277 (7) | −0.0001 (5) | 0.0021 (5) | −0.0004 (5) |
| O1 | 0.0323 (5) | 0.0227 (5) | 0.0256 (5) | −0.0013 (4) | 0.0069 (4) | −0.0038 (4) |
| O2 | 0.0415 (6) | 0.0204 (5) | 0.0332 (5) | 0.0037 (4) | 0.0057 (4) | 0.0041 (4) |
| N1 | 0.0293 (6) | 0.0192 (6) | 0.0288 (6) | 0.0010 (5) | 0.0024 (5) | −0.0043 (5) |
| C1 | 0.0244 (6) | 0.0211 (7) | 0.0223 (6) | −0.0002 (5) | −0.0017 (5) | −0.0016 (5) |
| C2 | 0.0283 (7) | 0.0216 (7) | 0.0247 (6) | −0.0002 (5) | 0.0040 (5) | −0.0012 (5) |
| O3—C9 | 1.2197 (15) | C6—H6 | 0.9500 |
| O4—C9 | 1.3088 (18) | C7—C8 | 1.382 (2) |
| O4—H4O | 0.96 (3) | C7—H7 | 0.9500 |
| O5—C10 | 1.2147 (16) | C8—H8 | 0.9500 |
| O6—C10 | 1.3086 (16) | O1—C1 | 1.2550 (15) |
| O6—H6O | 0.98 (2) | O2—C1 | 1.2498 (16) |
| C3—C8 | 1.3925 (18) | N1—C2 | 1.4720 (17) |
| C3—C4 | 1.396 (2) | N1—H1A | 0.917 (19) |
| C3—C9 | 1.4859 (18) | N1—H1B | 0.91 (2) |
| C4—C5 | 1.3855 (19) | N1—H1C | 0.88 (2) |
| C4—C10 | 1.4955 (18) | C1—C2 | 1.5083 (18) |
| C5—C6 | 1.385 (2) | C2—H2A | 0.9900 |
| C5—H5 | 0.9500 | C2—H2B | 0.9900 |
| C6—C7 | 1.378 (2) | ||
| C9—O4—H4O | 109.8 (14) | O3—C9—C3 | 122.68 (13) |
| C10—O6—H6O | 107.5 (13) | O4—C9—C3 | 113.67 (11) |
| C8—C3—C4 | 119.06 (12) | O5—C10—O6 | 123.72 (12) |
| C8—C3—C9 | 119.52 (12) | O5—C10—C4 | 121.39 (11) |
| C4—C3—C9 | 121.20 (11) | O6—C10—C4 | 114.70 (11) |
| C5—C4—C3 | 119.29 (12) | C2—N1—H1A | 111.5 (11) |
| C5—C4—C10 | 116.18 (12) | C2—N1—H1B | 111.5 (12) |
| C3—C4—C10 | 124.53 (12) | H1A—N1—H1B | 108.2 (16) |
| C6—C5—C4 | 121.11 (13) | C2—N1—H1C | 111.3 (12) |
| C6—C5—H5 | 119.4 | H1A—N1—H1C | 103.1 (16) |
| C4—C5—H5 | 119.4 | H1B—N1—H1C | 110.9 (17) |
| C7—C6—C5 | 119.71 (13) | O2—C1—O1 | 124.83 (12) |
| C7—C6—H6 | 120.1 | O2—C1—C2 | 117.52 (11) |
| C5—C6—H6 | 120.1 | O1—C1—C2 | 117.64 (11) |
| C6—C7—C8 | 119.78 (13) | N1—C2—C1 | 111.94 (11) |
| C6—C7—H7 | 120.1 | N1—C2—H2A | 109.2 |
| C8—C7—H7 | 120.1 | C1—C2—H2A | 109.2 |
| C7—C8—C3 | 121.05 (13) | N1—C2—H2B | 109.2 |
| C7—C8—H8 | 119.5 | C1—C2—H2B | 109.2 |
| C3—C8—H8 | 119.5 | H2A—C2—H2B | 107.9 |
| O3—C9—O4 | 123.61 (13) | ||
| C8—C3—C4—C5 | −0.36 (18) | C8—C3—C9—O3 | −159.60 (13) |
| C9—C3—C4—C5 | −174.93 (12) | C4—C3—C9—O3 | 14.95 (19) |
| C8—C3—C4—C10 | −179.55 (12) | C8—C3—C9—O4 | 18.29 (17) |
| C9—C3—C4—C10 | 5.88 (19) | C4—C3—C9—O4 | −167.16 (12) |
| C3—C4—C5—C6 | −0.2 (2) | C5—C4—C10—O5 | 59.45 (18) |
| C10—C4—C5—C6 | 179.09 (12) | C3—C4—C10—O5 | −121.34 (15) |
| C4—C5—C6—C7 | 0.6 (2) | C5—C4—C10—O6 | −115.59 (13) |
| C5—C6—C7—C8 | −0.5 (2) | C3—C4—C10—O6 | 63.62 (17) |
| C6—C7—C8—C3 | 0.0 (2) | O2—C1—C2—N1 | 179.74 (11) |
| C4—C3—C8—C7 | 0.46 (19) | O1—C1—C2—N1 | −1.15 (17) |
| C9—C3—C8—C7 | 175.12 (12) |
| H··· | ||||
| N1—H1 | 0.917 (19) | 1.992 (19) | 2.8398 (16) | 153.0 (16) |
| N1—H1 | 0.91 (2) | 2.13 (2) | 3.0219 (16) | 164.6 (17) |
| N1—H1 | 0.88 (2) | 2.181 (19) | 2.8934 (16) | 137.4 (15) |
| N1—H1 | 0.88 (2) | 2.416 (19) | 3.0681 (16) | 130.9 (15) |
| O4—H4 | 0.96 (3) | 1.58 (3) | 2.5383 (14) | 175 (2) |
| O6—H6 | 0.98 (2) | 1.56 (2) | 2.5337 (13) | 171 (2) |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N1—H1 | 0.917 (19) | 1.992 (19) | 2.8398 (16) | 153.0 (16) |
| N1—H1 | 0.91 (2) | 2.13 (2) | 3.0219 (16) | 164.6 (17) |
| N1—H1 | 0.88 (2) | 2.181 (19) | 2.8934 (16) | 137.4 (15) |
| N1—H1 | 0.88 (2) | 2.416 (19) | 3.0681 (16) | 130.9 (15) |
| O4—H4 | 0.96 (3) | 1.58 (3) | 2.5383 (14) | 175 (2) |
| O6—H6 | 0.98 (2) | 1.56 (2) | 2.5337 (13) | 171 (2) |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .