Literature DB >> 23476353

catena-Poly[[[aqua-(glycine-κO)lithium]-μ-glycine-κ(2) O:O'] bromide].

T Balakrishnan1, K Ramamurthi, J Jeyakanthan, S Thamotharan.   

Abstract

In the title coordination polymer, {[Li(C2H5NO2)2(H2O)]Br} n , the Li(+) cation is coordinated by three carboxyl-ate O atoms of zwitterionic glycine mol-ecules and by a water mol-ecule, forming a distorted tetra-hedral geometry. One of the two glycine mol-ecules bridges neighbouring complexes, forming an infinite chain parallel to the c axis. Polymeric chains are further linked by extensive hydrogen bonds involving the Br(-) anions and glycine and water mol-ecules, producing a three-dimensional network.

Entities:  

Year:  2012        PMID: 23476353      PMCID: PMC3588392          DOI: 10.1107/S1600536812050660

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For hydrogen-bonding motifs, see Bernstein et al. (1995 ▶). For glycine polymorphs, see: Marsh (1958 ▶); Iitaka (1960 ▶, 1961 ▶). For glycine with halogen and metal halogenides, see: Fleck (2008 ▶). For related structures, see: Müller et al. (1994 ▶); Baran et al. (2003 ▶, 2009 ▶); Fleck & Bohatý (2004 ▶); Fleck et al. (2006 ▶). For head-to-tail hydrogen bonds, see: Sharma et al. (2006 ▶); Selvaraj et al. (2007 ▶).

Experimental

Crystal data

[Li(C2H5NO2)2(H2O)]Br M = 255.01 Monoclinic, a = 7.5396 (6) Å b = 17.4173 (14) Å c = 8.2726 (12) Å β = 118.138 (7)° V = 957.96 (18) Å3 Z = 4 Mo Kα radiation μ = 4.28 mm−1 T = 173 K 0.61 × 0.30 × 0.30 mm

Data collection

STOE IPDS diffractometer Absorption correction: multi-scan (MULscanABS in PLATON; Spek, 2009 ▶) T min = 0.217, T max = 0.277 7515 measured reflections 1847 independent reflections 1520 reflections with I > 2σ(I) R int = 0.043

Refinement

R[F 2 > 2σ(F 2)] = 0.021 wR(F 2) = 0.051 S = 0.96 1847 reflections 151 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.55 e Å−3 Δρmin = −0.26 e Å−3 Data collection: EXPOSE in IPDS (Stoe & Cie, 2000 ▶); cell refinement: CELL in IPDS; data reduction: INTEGRATE in IPDS; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97. Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812050660/aa2077sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812050660/aa2077Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Li(C2H5NO2)2(H2O)]BrF(000) = 512
Mr = 255.01Dx = 1.768 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 7161 reflections
a = 7.5396 (6) Åθ = 2.3–26.0°
b = 17.4173 (14) ŵ = 4.28 mm1
c = 8.2726 (12) ÅT = 173 K
β = 118.138 (7)°Rod, colourless
V = 957.96 (18) Å30.61 × 0.30 × 0.30 mm
Z = 4
STOE IPDS diffractometer1847 independent reflections
Radiation source: fine-focus sealed tube1520 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.043
phi rotation scansθmax = 26.0°, θmin = 2.3°
Absorption correction: multi-scan (MULscanABS in PLATON; Spek, 2009)h = −9→9
Tmin = 0.217, Tmax = 0.277k = −21→21
7515 measured reflectionsl = −10→10
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.021H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.051w = 1/[σ2(Fo2) + (0.0317P)2] where P = (Fo2 + 2Fc2)/3
S = 0.96(Δ/σ)max = 0.001
1847 reflectionsΔρmax = 0.55 e Å3
151 parametersΔρmin = −0.26 e Å3
2 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0097 (8)
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.4191 (2)0.89555 (8)0.8413 (2)0.0210 (3)
O20.1743 (3)0.80884 (9)0.7211 (2)0.0250 (4)
O1W0.0182 (3)0.65924 (9)0.4468 (2)0.0218 (4)
H10.075 (4)0.6666 (14)0.385 (4)0.027 (7)*
H20.084 (4)0.6254 (14)0.522 (4)0.043 (9)*
O3−0.1525 (3)0.81668 (8)0.1971 (2)0.0270 (4)
O4−0.2535 (2)0.80493 (8)0.4080 (2)0.0217 (3)
N10.5965 (3)0.84975 (12)0.6419 (3)0.0205 (4)
H1A0.643 (4)0.8360 (15)0.559 (4)0.031 (7)*
H1B0.702 (5)0.8395 (17)0.755 (5)0.038 (8)*
H1C0.580 (5)0.899 (2)0.631 (4)0.047 (9)*
N2−0.2448 (3)0.96593 (11)0.1353 (3)0.0174 (4)
H2A−0.129 (5)0.9644 (14)0.156 (4)0.025 (7)*
H2B−0.323 (4)0.9429 (15)0.027 (4)0.029 (7)*
H2C−0.284 (4)1.0168 (17)0.126 (4)0.035 (8)*
C10.3295 (3)0.84132 (11)0.7358 (3)0.0153 (4)
C20.4092 (3)0.81116 (11)0.6103 (3)0.0174 (4)
H2E0.43420.75530.63070.021*
H2F0.30620.81890.48120.021*
C3−0.2198 (3)0.84265 (12)0.2952 (3)0.0166 (4)
C4−0.2679 (4)0.92762 (12)0.2840 (3)0.0204 (5)
H4A−0.40780.93430.26240.025*
H4B−0.17720.95230.40250.025*
Li1−0.0369 (6)0.7388 (2)0.5754 (5)0.0196 (8)
Br10.24155 (3)0.968012 (12)0.27597 (3)0.02208 (9)
U11U22U33U12U13U23
O10.0197 (8)0.0202 (8)0.0247 (9)−0.0040 (6)0.0118 (7)−0.0074 (6)
O20.0244 (9)0.0289 (8)0.0290 (10)−0.0120 (7)0.0186 (8)−0.0097 (7)
O1W0.0316 (9)0.0191 (8)0.0248 (10)0.0070 (7)0.0217 (9)0.0058 (7)
O30.0410 (10)0.0198 (7)0.0349 (10)0.0062 (7)0.0300 (9)0.0011 (7)
O40.0254 (8)0.0231 (7)0.0223 (9)0.0046 (6)0.0159 (8)0.0045 (6)
N10.0191 (11)0.0237 (10)0.0236 (12)−0.0025 (8)0.0142 (11)−0.0050 (8)
N20.0149 (9)0.0166 (9)0.0213 (11)0.0007 (8)0.0089 (9)−0.0015 (8)
C10.0165 (10)0.0150 (9)0.0145 (11)0.0024 (8)0.0073 (10)0.0018 (8)
C20.0191 (11)0.0168 (9)0.0201 (12)−0.0012 (8)0.0123 (10)−0.0027 (8)
C30.0128 (10)0.0204 (10)0.0157 (12)0.0008 (8)0.0061 (10)−0.0019 (8)
C40.0253 (12)0.0207 (11)0.0211 (12)0.0008 (9)0.0158 (11)−0.0023 (9)
Li10.023 (2)0.0190 (16)0.020 (2)−0.0040 (14)0.0125 (18)−0.0022 (14)
Br10.01662 (13)0.02188 (12)0.02587 (15)−0.00224 (9)0.00846 (10)−0.00292 (9)
O1—C11.247 (3)N1—H1C0.86 (3)
O2—C11.253 (3)N2—C41.480 (3)
O2—Li11.915 (4)N2—H2A0.81 (3)
O1W—Li11.908 (4)N2—H2B0.90 (3)
O1W—H10.816 (17)N2—H2C0.93 (3)
O1W—H20.829 (18)C1—C21.518 (3)
O3—C31.228 (3)C2—H2E0.9900
O3—Li1i1.880 (4)C2—H2F0.9900
O4—C31.261 (3)C3—C41.516 (3)
O4—Li11.944 (4)C4—H4A0.9900
N1—C21.472 (3)C4—H4B0.9900
N1—H1A0.94 (3)Li1—O3ii1.880 (4)
N1—H1B0.92 (4)
C1—O2—Li1144.09 (18)O3—C3—O4126.0 (2)
Li1—O1W—H1123.4 (18)O3—C3—C4118.73 (18)
Li1—O1W—H2108 (2)O4—C3—C4115.30 (17)
H1—O1W—H2106 (3)O3—C3—Li196.65 (15)
C3—O3—Li1i169.50 (19)C4—C3—Li1134.84 (17)
C3—O4—Li1116.16 (16)N2—C4—C3111.84 (17)
C2—N1—H1A114.4 (17)N2—C4—H4A109.2
C2—N1—H1B113.0 (18)C3—C4—H4A109.2
H1A—N1—H1B105 (3)N2—C4—H4B109.2
C2—N1—H1C111 (2)C3—C4—H4B109.2
H1A—N1—H1C105 (3)H4A—C4—H4B107.9
H1B—N1—H1C108 (3)O3ii—Li1—O1W101.73 (17)
C4—N2—H2A110 (2)O3ii—Li1—O2116.6 (2)
C4—N2—H2B110.4 (17)O1W—Li1—O2118.6 (2)
H2A—N2—H2B109 (3)O3ii—Li1—O4103.87 (18)
C4—N2—H2C109.9 (18)O1W—Li1—O4111.3 (2)
H2A—N2—H2C109 (2)O2—Li1—O4103.93 (17)
H2B—N2—H2C108 (3)O3ii—Li1—C3128.00 (19)
O1—C1—O2125.69 (19)O1W—Li1—C399.35 (16)
O1—C1—C2118.81 (18)O2—Li1—C392.83 (15)
O2—C1—C2115.49 (18)O4—Li1—C324.36 (7)
N1—C2—C1112.13 (17)O3ii—Li1—H289.3 (7)
N1—C2—H2E109.2O1W—Li1—H220.0 (6)
C1—C2—H2E109.2O2—Li1—H2112.4 (8)
N1—C2—H2F109.2O4—Li1—H2130.3 (7)
C1—C2—H2F109.2C3—Li1—H2119.3 (6)
H2E—C2—H2F107.9
Li1—O2—C1—O1168.2 (3)C1—O2—Li1—C3−72.0 (3)
Li1—O2—C1—C2−10.9 (4)C3—O4—Li1—O3ii−172.65 (17)
O1—C1—C2—N13.5 (3)C3—O4—Li1—O1W−63.9 (2)
O2—C1—C2—N1−177.3 (2)C3—O4—Li1—O264.9 (2)
Li1i—O3—C3—O4−14.7 (13)O3—C3—Li1—O3ii−133.0 (2)
Li1i—O3—C3—C4165.1 (10)O4—C3—Li1—O3ii9.1 (2)
Li1i—O3—C3—Li114.2 (11)C4—C3—Li1—O3ii84.0 (3)
Li1—O4—C3—O349.0 (3)O3—C3—Li1—O1W−20.0 (2)
Li1—O4—C3—C4−130.8 (2)O4—C3—Li1—O1W122.0 (2)
O3—C3—C4—N26.3 (3)C4—C3—Li1—O1W−163.0 (2)
O4—C3—C4—N2−173.94 (19)O3—C3—Li1—O299.58 (17)
Li1—C3—C4—N2143.3 (2)O4—C3—Li1—O2−118.4 (2)
C1—O2—Li1—O3ii152.4 (3)C4—C3—Li1—O2−43.4 (3)
C1—O2—Li1—O1W30.3 (4)O3—C3—Li1—O4−142.0 (3)
C1—O2—Li1—O4−93.9 (3)C4—C3—Li1—O475.0 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O4iii0.94 (3)1.83 (3)2.774 (2)176 (3)
N1—H1B···O1Wiv0.92 (4)2.15 (4)2.989 (3)151 (2)
N1—H1C···Br1v0.86 (3)2.61 (3)3.353 (2)146 (3)
N2—H2A···Br10.81 (3)2.48 (3)3.283 (2)170 (3)
N2—H2B···O1vi0.90 (3)2.00 (3)2.833 (3)153 (2)
N2—H2C···O1vii0.93 (3)1.92 (3)2.797 (2)157 (3)
O1W—H1···O2i0.82 (2)1.88 (2)2.692 (2)172 (3)
O1W—H2···Br1ii0.83 (2)2.48 (2)3.2923 (17)169 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1A⋯O4i 0.94 (3)1.83 (3)2.774 (2)176 (3)
N1—H1B⋯O1W ii 0.92 (4)2.15 (4)2.989 (3)151 (2)
N1—H1C⋯Br1iii 0.86 (3)2.61 (3)3.353 (2)146 (3)
N2—H2A⋯Br10.81 (3)2.48 (3)3.283 (2)170 (3)
N2—H2B⋯O1iv 0.90 (3)2.00 (3)2.833 (3)153 (2)
N2—H2C⋯O1v 0.93 (3)1.92 (3)2.797 (2)157 (3)
O1W—H1⋯O2vi 0.82 (2)1.88 (2)2.692 (2)172 (3)
O1W—H2⋯Br1vii 0.83 (2)2.48 (2)3.2923 (17)169 (3)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) ; (vii) .

  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Two new non-centrosymmetric lithium salts of glycine: bis(glycine) lithium chromate monohydrate and bis(glycine) lithium molybdate.

Authors:  Michel Fleck; Karolina Schwendtner; Ana Hensler
Journal:  Acta Crystallogr C       Date:  2006-03-11       Impact factor: 1.172

3.  Three novel non-centrosymmetric compounds of glycine: glycine lithium sulfate, glycine nickel dichloride dihydrate and glycine zinc sulfate trihydrate.

Authors:  Michel Fleck; Ladislav Bohatý
Journal:  Acta Crystallogr C       Date:  2004-05-31       Impact factor: 1.172

4.  X-ray studies of crystalline complexes involving amino acids and peptides. XLIII. Adipic acid complexes of L- and DL-lysine.

Authors:  Alok Sharma; S Thamotharan; Siddhartha Roy; M Vijayan
Journal:  Acta Crystallogr C       Date:  2006-02-28       Impact factor: 1.172

5.  X-ray studies of crystalline complexes involving amino acids and peptides. XLIV. Invariant features of supramolecular association and chiral effects in the complexes of arginine and lysine with tartaric acid.

Authors:  M Selvaraj; S Thamotharan; Siddhartha Roy; M Vijayan
Journal:  Acta Crystallogr B       Date:  2007-05-16

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  6 in total
  4 in total

1.  Crystal structure of catena-poly[[[tri-aqua-strontium]-di-μ2-glycinato] dibromide].

Authors:  Palanisamy Revathi; Thangavelu Balakrishnan; Kandasamy Ramamurthi; Subbiah Thamotharan
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-06-30

2.  Crystal structure of catena-poly[[cadmium(II)-di-μ2-bromido-μ2-l-proline-κ(2) O:O'] monohydrate].

Authors:  S Sathiskumar; T Balakrishnan; K Ramamurthi; S Thamotharan
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-01-24

3.  Crystal structure and Hirshfeld surface analysis of 1-carb-oxy-2-(3,4-di-hydroxy-phen-yl)ethan-1-aminium chloride 2-ammonio-3-(3,4-di-hydroxy-phen-yl)propano-ate: a new polymorph of l-dopa HCl and isotypic with its bromide counterpart.

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Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2016-10-25

4.  Crystal structure of poly[[μ2-di-aqua-di-aqua-μ2-l-proline-κ(2) O:O'-strontium] dibromide].

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  4 in total

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