Literature DB >> 27838363

The tale of SSB.

Piero R Bianco1.   

Abstract

The E. coli single stranded DNA binding protein (SSB) is essential to all aspects of DNA metabolism. Here, it has two seemingly disparate but equally important roles: it binds rapidly and cooperatively to single stranded DNA (ssDNA) and it binds to partner proteins that constitute the SSB interactome. These two roles are not disparate but are instead, intimately linked. A model is presented wherein the intrinsically disordered linker (IDL) is directly responsible for mediating protein-protein interactions. It does this by binding, via PXXP motifs, to the OB-fold (aka SH3 domain) of a nearby protein. When the nearby protein is another SSB tetramer, this leads to a highly efficient ssDNA binding reaction that rapidly and cooperatively covers and protects the exposed nucleic acid from degradation. Alternatively, when the nearby protein is a member of the SSB interactome, loading of the enzyme onto the DNA takes places.
Copyright © 2016 Elsevier Ltd. All rights reserved.

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Year:  2016        PMID: 27838363      PMCID: PMC5423859          DOI: 10.1016/j.pbiomolbio.2016.11.001

Source DB:  PubMed          Journal:  Prog Biophys Mol Biol        ISSN: 0079-6107            Impact factor:   3.667


  63 in total

1.  Resolution of converging replication forks by RecQ and topoisomerase III.

Authors:  Catherine Suski; Kenneth J Marians
Journal:  Mol Cell       Date:  2008-06-20       Impact factor: 17.970

2.  Crystal and molecular structure of a collagen-like peptide at 1.9 A resolution.

Authors:  J Bella; M Eaton; B Brodsky; H M Berman
Journal:  Science       Date:  1994-10-07       Impact factor: 47.728

Review 3.  SSB and the RecG DNA helicase: an intimate association to rescue a stalled replication fork.

Authors:  Piero R Bianco; Yuri L Lyubchenko
Journal:  Protein Sci       Date:  2017-03-17       Impact factor: 6.725

4.  Intrinsically disordered C-terminal tails of E. coli single-stranded DNA binding protein regulate cooperative binding to single-stranded DNA.

Authors:  Alexander G Kozlov; Elizabeth Weiland; Anuradha Mittal; Vince Waldman; Edwin Antony; Nicole Fazio; Rohit V Pappu; Timothy M Lohman
Journal:  J Mol Biol       Date:  2015-01-03       Impact factor: 5.469

Review 5.  Polyproline-II helix in proteins: structure and function.

Authors:  Alexei A Adzhubei; Michael J E Sternberg; Alexander A Makarov
Journal:  J Mol Biol       Date:  2013-03-16       Impact factor: 5.469

6.  Solvent-accessible surfaces of proteins and nucleic acids.

Authors:  M L Connolly
Journal:  Science       Date:  1983-08-19       Impact factor: 47.728

7.  Microsecond dynamics of protein-DNA interactions: direct observation of the wrapping/unwrapping kinetics of single-stranded DNA around the E. coli SSB tetramer.

Authors:  Serguei V Kuznetsov; Alexander G Kozlov; Timothy M Lohman; Anjum Ansari
Journal:  J Mol Biol       Date:  2006-05-26       Impact factor: 5.469

8.  The C-terminal domain of the bacterial SSB protein acts as a DNA maintenance hub at active chromosome replication forks.

Authors:  Audrey Costes; François Lecointe; Stephen McGovern; Sophie Quevillon-Cheruel; Patrice Polard
Journal:  PLoS Genet       Date:  2010-12-09       Impact factor: 5.917

9.  Functional evolution of two subtly different (similar) folds.

Authors:  V Agrawal; R K Kishan
Journal:  BMC Struct Biol       Date:  2001-12-21

10.  RecG interacts directly with SSB: implications for stalled replication fork regression.

Authors:  Jackson A Buss; Yuji Kimura; Piero R Bianco
Journal:  Nucleic Acids Res       Date:  2008-11-05       Impact factor: 16.971

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  29 in total

Review 1.  SSB and the RecG DNA helicase: an intimate association to rescue a stalled replication fork.

Authors:  Piero R Bianco; Yuri L Lyubchenko
Journal:  Protein Sci       Date:  2017-03-17       Impact factor: 6.725

2.  Single-Stranded DNA-Binding Proteins in the Archaea.

Authors:  Najwa Taib; Simonetta Gribaldo; Stuart A MacNeill
Journal:  Methods Mol Biol       Date:  2021

3.  The intrinsically disordered linker of E. coli SSB is critical for the release from single-stranded DNA.

Authors:  Hui Yin Tan; Luke A Wilczek; Sasheen Pottinger; Maria Manosas; Cong Yu; Trong Nguyenduc; Piero R Bianco
Journal:  Protein Sci       Date:  2017-03-08       Impact factor: 6.725

Review 4.  A change of view: homologous recombination at single-molecule resolution.

Authors:  Kyle Kaniecki; Luisina De Tullio; Eric C Greene
Journal:  Nat Rev Genet       Date:  2017-12-11       Impact factor: 53.242

Review 5.  Gp2.5, the multifunctional bacteriophage T7 single-stranded DNA binding protein.

Authors:  Alfredo J Hernandez; Charles C Richardson
Journal:  Semin Cell Dev Biol       Date:  2018-03-28       Impact factor: 7.727

Review 6.  Dynamics of E. coli single stranded DNA binding (SSB) protein-DNA complexes.

Authors:  Edwin Antony; Timothy M Lohman
Journal:  Semin Cell Dev Biol       Date:  2018-03-30       Impact factor: 7.727

7.  Atomic force microscopy-based characterization of the interaction of PriA helicase with stalled DNA replication forks.

Authors:  Yaqing Wang; Zhiqiang Sun; Piero R Bianco; Yuri L Lyubchenko
Journal:  J Biol Chem       Date:  2020-03-24       Impact factor: 5.157

8.  Development of a single-stranded DNA-binding protein fluorescent fusion toolbox.

Authors:  Katarzyna Dubiel; Camille Henry; Lisanne M Spenkelink; Alexander G Kozlov; Elizabeth A Wood; Slobodan Jergic; Nicholas E Dixon; Antoine M van Oijen; Michael M Cox; Timothy M Lohman; Steven J Sandler; James L Keck
Journal:  Nucleic Acids Res       Date:  2020-06-19       Impact factor: 16.971

Review 9.  The mechanism of action of the SSB interactome reveals it is the first OB-fold family of genome guardians in prokaryotes.

Authors:  Piero R Bianco
Journal:  Protein Sci       Date:  2021-06-14       Impact factor: 6.993

10.  SSB Facilitates Fork-Substrate Discrimination by the PriA DNA Helicase.

Authors:  Hui Yin Tan; Piero R Bianco
Journal:  ACS Omega       Date:  2021-06-15
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