Literature DB >> 28078722

SSB and the RecG DNA helicase: an intimate association to rescue a stalled replication fork.

Piero R Bianco1,2,3, Yuri L Lyubchenko4.   

Abstract

In E. coli, the regression of stalled DNA replication forks is catalyzed by the DNA helicase RecG. One means of gaining access to the fork is by binding to the single strand binding protein or SSB. This interaction occurs via the wedge domain of RecG and the intrinsically disordered linker (IDL) of SSB, in a manner similar to that of SH3 domains binding to PXXP motif-containing ligands in eukaryotic cells. During loading, SSB remodels the wedge domain so that the helicase domains bind to the parental, duplex DNA, permitting the helicase to translocate using thermal energy. This translocation may be used to clear the fork of obstacles, prior to the initiation of fork regression.
© 2017 The Protein Society.

Entities:  

Keywords:  DNA repair; DNA replication; OB-fold; PXXP motif; RecG; SH3 domain; SSB; atomic force microscopy; helicase; stalled replication fork

Mesh:

Substances:

Year:  2017        PMID: 28078722      PMCID: PMC5368079          DOI: 10.1002/pro.3114

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  112 in total

1.  The importance of repairing stalled replication forks.

Authors:  M M Cox; M F Goodman; K N Kreuzer; D J Sherratt; S J Sandler; K J Marians
Journal:  Nature       Date:  2000-03-02       Impact factor: 49.962

2.  Modulation of RNA polymerase by (p)ppGpp reveals a RecG-dependent mechanism for replication fork progression.

Authors:  P McGlynn; R G Lloyd
Journal:  Cell       Date:  2000-03-31       Impact factor: 41.582

3.  Positive torsional strain causes the formation of a four-way junction at replication forks.

Authors:  L Postow; C Ullsperger; R W Keller; C Bustamante; A V Vologodskii; N R Cozzarelli
Journal:  J Biol Chem       Date:  2000-10-30       Impact factor: 5.157

4.  Resolution of converging replication forks by RecQ and topoisomerase III.

Authors:  Catherine Suski; Kenneth J Marians
Journal:  Mol Cell       Date:  2008-06-20       Impact factor: 17.970

5.  Structure of the SSB-DNA polymerase III interface and its role in DNA replication.

Authors:  Aimee H Marceau; Soon Bahng; Shawn C Massoni; Nicholas P George; Steven J Sandler; Kenneth J Marians; James L Keck
Journal:  EMBO J       Date:  2011-08-19       Impact factor: 11.598

6.  Intrinsically disordered C-terminal tails of E. coli single-stranded DNA binding protein regulate cooperative binding to single-stranded DNA.

Authors:  Alexander G Kozlov; Elizabeth Weiland; Anuradha Mittal; Vince Waldman; Edwin Antony; Nicole Fazio; Rohit V Pappu; Timothy M Lohman
Journal:  J Mol Biol       Date:  2015-01-03       Impact factor: 5.469

7.  A conserved NTP-motif in putative helicases.

Authors:  A E Gorbalenya; E V Koonin; A P Donchenko; V M Blinov
Journal:  Nature       Date:  1988-05-05       Impact factor: 49.962

8.  Microsecond dynamics of protein-DNA interactions: direct observation of the wrapping/unwrapping kinetics of single-stranded DNA around the E. coli SSB tetramer.

Authors:  Serguei V Kuznetsov; Alexander G Kozlov; Timothy M Lohman; Anjum Ansari
Journal:  J Mol Biol       Date:  2006-05-26       Impact factor: 5.469

Review 9.  Recombinational repair and restart of damaged replication forks.

Authors:  Peter McGlynn; Robert G Lloyd
Journal:  Nat Rev Mol Cell Biol       Date:  2002-11       Impact factor: 94.444

10.  Functional evolution of two subtly different (similar) folds.

Authors:  V Agrawal; R K Kishan
Journal:  BMC Struct Biol       Date:  2001-12-21
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  18 in total

1.  The intrinsically disordered linker of E. coli SSB is critical for the release from single-stranded DNA.

Authors:  Hui Yin Tan; Luke A Wilczek; Sasheen Pottinger; Maria Manosas; Cong Yu; Trong Nguyenduc; Piero R Bianco
Journal:  Protein Sci       Date:  2017-03-08       Impact factor: 6.725

2.  L-arabinose induces the formation of viable non-proliferating spheroplasts in Vibrio cholerae.

Authors:  Elena Espinosa; Sandra Daniel; Sara B Hernández; Anthony Goudin; Felipe Cava; François-Xavier Barre; Elisa Galli
Journal:  Appl Environ Microbiol       Date:  2020-12-18       Impact factor: 4.792

3.  Probing The Structure And Dynamics Of Nucleosomes Using Atomic Force Microscopy Imaging.

Authors:  Micah P Stumme-Diers; Tommy Stormberg; Zhiqiang Sun; Yuri L Lyubchenko
Journal:  J Vis Exp       Date:  2019-01-31       Impact factor: 1.355

Review 4.  The tale of SSB.

Authors:  Piero R Bianco
Journal:  Prog Biophys Mol Biol       Date:  2016-11-09       Impact factor: 3.667

Review 5.  Template-switching during replication fork repair in bacteria.

Authors:  Susan T Lovett
Journal:  DNA Repair (Amst)       Date:  2017-06-13

6.  Molecular mechanism of DNA association with single-stranded DNA binding protein.

Authors:  Christopher Maffeo; Aleksei Aksimentiev
Journal:  Nucleic Acids Res       Date:  2017-12-01       Impact factor: 16.971

7.  Atomic force microscopy-based characterization of the interaction of PriA helicase with stalled DNA replication forks.

Authors:  Yaqing Wang; Zhiqiang Sun; Piero R Bianco; Yuri L Lyubchenko
Journal:  J Biol Chem       Date:  2020-03-24       Impact factor: 5.157

Review 8.  The mechanism of action of the SSB interactome reveals it is the first OB-fold family of genome guardians in prokaryotes.

Authors:  Piero R Bianco
Journal:  Protein Sci       Date:  2021-06-14       Impact factor: 6.993

9.  In Vivo Binding of Single-Stranded DNA-Binding Protein to Stalled Replication Fork Helicases.

Authors:  Cong Yu; Piero R Bianco
Journal:  Methods Mol Biol       Date:  2021

10.  The mechanism of Single strand binding protein-RecG binding: Implications for SSB interactome function.

Authors:  Wenfei Ding; Hui Yin Tan; Jia Xiang Zhang; Luke A Wilczek; Karin R Hsieh; Jeffrey A Mulkin; Piero R Bianco
Journal:  Protein Sci       Date:  2020-04-17       Impact factor: 6.993

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