Literature DB >> 27790999

Terpene synthase genes in eukaryotes beyond plants and fungi: Occurrence in social amoebae.

Xinlu Chen1, Tobias G Köllner2, Qidong Jia3, Ayla Norris3, Balaji Santhanam4, Patrick Rabe5, Jeroen S Dickschat5, Gad Shaulsky6, Jonathan Gershenzon2, Feng Chen7.   

Abstract

Terpenes are structurally diverse natural products involved in many ecological interactions. The pivotal enzymes for terpene biosynthesis, terpene synthases (TPSs), had been described only in plants and fungi in the eukaryotic domain. In this report, we systematically analyzed the genome sequences of a broad range of nonplant/nonfungus eukaryotes and identified putative TPS genes in six species of amoebae, five of which are multicellular social amoebae from the order of Dictyosteliida. A phylogenetic analysis revealed that amoebal TPSs are evolutionarily more closely related to fungal TPSs than to bacterial TPSs. The social amoeba Dictyostelium discoideum was selected for functional study of the identified TPSs. D. discoideum grows as a unicellular organism when food is abundant and switches from vegetative growth to multicellular development upon starvation. We found that expression of most D. discoideum TPS genes was induced during development. Upon heterologous expression, all nine TPSs from D. discoideum showed sesquiterpene synthase activities. Some also exhibited monoterpene and/or diterpene synthase activities. Direct measurement of volatile terpenes in cultures of D. discoideum revealed essentially no emission at an early stage of development. In contrast, a bouquet of terpenes, dominated by sesquiterpenes including β-barbatene and (E,E)-α-farnesene, was detected at the middle and late stages of development, suggesting a development-specific function of volatile terpenes in D. discoideum. The patchy distribution of TPS genes in the eukaryotic domain and the evidence for TPS function in D. discoideum indicate that the TPS genes mediate lineage-specific adaptations.

Entities:  

Keywords:  amoebae; chemical ecology; evolution; terpene synthases; volatiles

Mesh:

Substances:

Year:  2016        PMID: 27790999      PMCID: PMC5087028          DOI: 10.1073/pnas.1610379113

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  33 in total

1.  Defensive weapons and defense signals in plants: some metabolites serve both roles.

Authors:  Daniel Maag; Matthias Erb; Tobias G Köllner; Jonathan Gershenzon
Journal:  Bioessays       Date:  2014-11-12       Impact factor: 4.345

2.  The revised classification of eukaryotes.

Authors:  Sina M Adl; Alastair G B Simpson; Christopher E Lane; Julius Lukeš; David Bass; Samuel S Bowser; Matthew W Brown; Fabien Burki; Micah Dunthorn; Vladimir Hampl; Aaron Heiss; Mona Hoppenrath; Enrique Lara; Line Le Gall; Denis H Lynn; Hilary McManus; Edward A D Mitchell; Sharon E Mozley-Stanridge; Laura W Parfrey; Jan Pawlowski; Sonja Rueckert; Laura Shadwick; Lora Shadwick; Conrad L Schoch; Alexey Smirnov; Frederick W Spiegel
Journal:  J Eukaryot Microbiol       Date:  2012-09       Impact factor: 3.346

Review 3.  Capturing volatile natural products by mass spectrometry.

Authors:  Jeroen S Dickschat
Journal:  Nat Prod Rep       Date:  2014-06       Impact factor: 13.423

Review 4.  The family of terpene synthases in plants: a mid-size family of genes for specialized metabolism that is highly diversified throughout the kingdom.

Authors:  Feng Chen; Dorothea Tholl; Jörg Bohlmann; Eran Pichersky
Journal:  Plant J       Date:  2011-04       Impact factor: 6.417

5.  The possible role of ammonia in phototaxis of migrating slugs of Dictyostelium discoideum.

Authors:  J T Bonner; A Chiang; J Lee; H B Suthers
Journal:  Proc Natl Acad Sci U S A       Date:  1988-06       Impact factor: 11.205

6.  Transcriptional profiling of Dictyostelium with RNA sequencing.

Authors:  Edward Roshan Miranda; Gregor Rot; Marko Toplak; Balaji Santhanam; Tomaz Curk; Gad Shaulsky; Blaz Zupan
Journal:  Methods Mol Biol       Date:  2013

7.  Conserved developmental transcriptomes in evolutionarily divergent species.

Authors:  Anup Parikh; Edward Roshan Miranda; Mariko Katoh-Kurasawa; Danny Fuller; Gregor Rot; Lan Zagar; Tomaz Curk; Richard Sucgang; Rui Chen; Blaz Zupan; William F Loomis; Adam Kuspa; Gad Shaulsky
Journal:  Genome Biol       Date:  2010-03-17       Impact factor: 13.583

8.  Unique animal prenyltransferase with monoterpene synthase activity.

Authors:  Anna B Gilg; Claus Tittiger; Gary J Blomquist
Journal:  Naturwissenschaften       Date:  2009-03-10

9.  A general purpose method for extracting RNA from Dictyostelium cells.

Authors:  Karen E Pilcher; Pascale Gaudet; Petra Fey; Anthony S Kowal; Rex L Chisholm
Journal:  Nat Protoc       Date:  2007       Impact factor: 13.491

10.  The Amoebozoa.

Authors:  Christina Schilde; Pauline Schaap
Journal:  Methods Mol Biol       Date:  2013
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  23 in total

1.  Terpene Biosynthesis in Red Algae Is Catalyzed by Microbial Type But Not Typical Plant Terpene Synthases.

Authors:  Guo Wei; Qidong Jia; Xinlu Chen; Tobias G Köllner; Debashish Bhattacharya; Gane Ka-Shu Wong; Jonathan Gershenzon; Feng Chen
Journal:  Plant Physiol       Date:  2018-12-11       Impact factor: 8.340

2.  Ancient plant-like terpene biosynthesis in corals.

Authors:  Immo Burkhardt; Tristan de Rond; Percival Yang-Ting Chen; Bradley S Moore
Journal:  Nat Chem Biol       Date:  2022-05-23       Impact factor: 16.174

3.  Engineering the amoeba Dictyostelium discoideum for biosynthesis of a cannabinoid precursor and other polyketides.

Authors:  Christin Reimer; Johann E Kufs; Julia Rautschek; Lars Regestein; Vito Valiante; Falk Hillmann
Journal:  Nat Biotechnol       Date:  2022-01-06       Impact factor: 68.164

4.  Identification and Characterization of Bifunctional Drimenol Synthases of Marine Bacterial Origin.

Authors:  Nhu Ngoc Quynh Vo; Yuhta Nomura; Kiyomi Kinugasa; Hiroshi Takagi; Shunji Takahashi
Journal:  ACS Chem Biol       Date:  2022-04-21       Impact factor: 4.634

5.  A detailed view on 1,8-cineol biosynthesis by Streptomyces clavuligerus.

Authors:  Jan Rinkel; Patrick Rabe; Laura Zur Horst; Jeroen S Dickschat
Journal:  Beilstein J Org Chem       Date:  2016-11-04       Impact factor: 2.883

Review 6.  Microbial Volatiles: Small Molecules with an Important Role in Intra- and Inter-Kingdom Interactions.

Authors:  Kristin Schulz-Bohm; Lara Martín-Sánchez; Paolina Garbeva
Journal:  Front Microbiol       Date:  2017-12-12       Impact factor: 5.640

Review 7.  Eat Prey, Live: Dictyostelium discoideum As a Model for Cell-Autonomous Defenses.

Authors:  Joe Dan Dunn; Cristina Bosmani; Caroline Barisch; Lyudmil Raykov; Louise H Lefrançois; Elena Cardenal-Muñoz; Ana Teresa López-Jiménez; Thierry Soldati
Journal:  Front Immunol       Date:  2018-01-04       Impact factor: 7.561

8.  Two New Terpenes Isolated from Dictyostelium Cellular Slime Molds.

Authors:  Hitomi Sasaki; Yuzuru Kubohara; Hirotaka Ishigaki; Katsunori Takahashi; Hiromi Eguchi; Akihiro Sugawara; Yoshiteru Oshima; Haruhisa Kikuchi
Journal:  Molecules       Date:  2020-06-23       Impact factor: 4.411

Review 9.  Mining and unearthing hidden biosynthetic potential.

Authors:  Kirstin Scherlach; Christian Hertweck
Journal:  Nat Commun       Date:  2021-06-23       Impact factor: 14.919

10.  18-Hydroxydolabella-3,7-diene synthase - a diterpene synthase from Chitinophaga pinensis.

Authors:  Jeroen S Dickschat; Jan Rinkel; Patrick Rabe; Arman Beyraghdar Kashkooli; Harro J Bouwmeester
Journal:  Beilstein J Org Chem       Date:  2017-08-23       Impact factor: 2.883

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