Literature DB >> 23020233

The revised classification of eukaryotes.

Sina M Adl1, Alastair G B Simpson, Christopher E Lane, Julius Lukeš, David Bass, Samuel S Bowser, Matthew W Brown, Fabien Burki, Micah Dunthorn, Vladimir Hampl, Aaron Heiss, Mona Hoppenrath, Enrique Lara, Line Le Gall, Denis H Lynn, Hilary McManus, Edward A D Mitchell, Sharon E Mozley-Stanridge, Laura W Parfrey, Jan Pawlowski, Sonja Rueckert, Laura Shadwick, Lora Shadwick, Conrad L Schoch, Alexey Smirnov, Frederick W Spiegel.   

Abstract

This revision of the classification of eukaryotes, which updates that of Adl et al. [J. Eukaryot. Microbiol. 52 (2005) 399], retains an emphasis on the protists and incorporates changes since 2005 that have resolved nodes and branches in phylogenetic trees. Whereas the previous revision was successful in re-introducing name stability to the classification, this revision provides a classification for lineages that were then still unresolved. The supergroups have withstood phylogenetic hypothesis testing with some modifications, but despite some progress, problematic nodes at the base of the eukaryotic tree still remain to be statistically resolved. Looking forward, subsequent transformations to our understanding of the diversity of life will be from the discovery of novel lineages in previously under-sampled areas and from environmental genomic information.
© 2012 The Author(s) Journal of Eukaryotic Microbiology © 2012 International Society of Protistologists.

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Year:  2012        PMID: 23020233      PMCID: PMC3483872          DOI: 10.1111/j.1550-7408.2012.00644.x

Source DB:  PubMed          Journal:  J Eukaryot Microbiol        ISSN: 1066-5234            Impact factor:   3.346


  27 in total

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Journal:  J Eukaryot Microbiol       Date:  2009 Nov-Dec       Impact factor: 3.346

5.  Reevaluation of the phylogenetic relationship between mobilid and sessilid peritrichs (Ciliophora, Oligohymenophorea) based on small subunit rRNA genes sequences.

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Journal:  J Eukaryot Microbiol       Date:  2006 Sep-Oct       Impact factor: 3.346

6.  Novel cultured protists identify deep-branching environmental DNA clades of cercozoa: New Genera Tremula, Micrometopion, Minimassisteria, Nudifila, Peregrinia.

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Journal:  Mol Biol Evol       Date:  2009-08-19       Impact factor: 16.240

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  379 in total

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Review 2.  Horizontal and endosymbiotic gene transfer in early plastid evolution.

Authors:  Rafael I Ponce-Toledo; Purificación López-García; David Moreira
Journal:  New Phytol       Date:  2019-07-04       Impact factor: 10.151

3.  Primary endosymbiosis and the evolution of light and oxygen sensing in photosynthetic eukaryotes.

Authors:  Nathan C Rockwell; J Clark Lagarias; Debashish Bhattacharya
Journal:  Front Ecol Evol       Date:  2014

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Journal:  Proc Natl Acad Sci U S A       Date:  2017-06-19       Impact factor: 11.205

Review 5.  Vermamoeba vermiformis: a Free-Living Amoeba of Interest.

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Journal:  Microb Ecol       Date:  2018-05-08       Impact factor: 4.552

6.  Paleobiological perspectives on early eukaryotic evolution.

Authors:  Andrew H Knoll
Journal:  Cold Spring Harb Perspect Biol       Date:  2014-01-01       Impact factor: 10.005

7.  Bacterial proteins pinpoint a single eukaryotic root.

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8.  Pervasive contingency and entrenchment in a billion years of Hsp90 evolution.

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Review 9.  An evolutionary balance: conservation vs innovation in ciliate membrane trafficking.

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10.  NIF-type iron-sulfur cluster assembly system is duplicated and distributed in the mitochondria and cytosol of Mastigamoeba balamuthi.

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