| Literature DB >> 27760082 |
Louis R Pasquale1, Hugues Aschard, Jae H Kang, Jessica N Cooke Bailey, Sara Lindström, Daniel I Chasman, William G Christen, R Rand Allingham, Allison Ashley-Koch, Richard K Lee, Sayoko E Moroi, Murray H Brilliant, Gadi Wollstein, Joel S Schuman, John Fingert, Donald L Budenz, Tony Realini, Terry Gaasterland, Douglas Gaasterland, William K Scott, Kuldev Singh, Arthur J Sit, Robert P Igo, Yeunjoo E Song, Lisa Hark, Robert Ritch, Douglas J Rhee, Vikas Gulati, Shane Havens, Douglas Vollrath, Donald J Zack, Felipe Medeiros, Robert N Weinreb, Margaret A Pericak-Vance, Yutao Liu, Peter Kraft, Julia E Richards, Bernard A Rosner, Michael A Hauser, Jonathan L Haines, Janey L Wiggs.
Abstract
OBJECTIVE: Several attributes of female reproductive history, including age at natural menopause (ANM), have been related to primary open-angle glaucoma (POAG). We assembled 18 previously reported common genetic variants that predict ANM to determine their association with ANM or POAG.Entities:
Mesh:
Year: 2017 PMID: 27760082 PMCID: PMC5266624 DOI: 10.1097/GME.0000000000000741
Source DB: PubMed Journal: Menopause ISSN: 1072-3714 Impact factor: 2.953
ANM single nucleotide polymorphisms in relation to self-reported ANM in the Nurses’ Health Study (n = 7,143)
| SNP | chr | Gene | A0/A1 | Reported effect | Beta | |
| SNP analysis | ||||||
| rs4246511 | 1 | T/C | 0.24 | 0.315 | 6.5 × 10−6 | |
| rs1635501 | 1 | T/C | 0.16 | 0.261 | 3.3 × 10−5 | |
| rs2303369 | 2 | C/T | 0.18 | 0.259 | 4.5 × 10−5 | |
| rs10183486 | 2 | C/T | 0.20 | 0.161 | 0.012 | |
| rs4693089 | 4 | G/A | 0.23 | 0.296 | 1.7 × 10−6 | |
| rs890835 | 5 | A/C | 0.18 | 0.159 | 0.10 | |
| rs365132 | 5 | T/G | 0.29 | 0.274 | 5.2 × 10−6 | |
| rs2153157 | 6 | A/G | 0.17 | 0.228 | 2.0 × 10−4 | |
| rs2517388 | 8 | G/T | 0.26 | 0.254 | 2.5 × 10−3 | |
| rs12294104 | 11 | near | T/C | 0.23 | 0.159 | 0.054 |
| rs2277339 | 12 | T/G | 0.38 | 0.481 | 6.9 × 10−6 | |
| rs3736830 | 13 | C/G | 0.18 | 0.207 | 0.013 | |
| rs4886238 | 13 | A/G | 0.17 | 0.157 | 0.017 | |
| rs2307449 | 15 | T/G | 0.18 | 0.187 | 0.0030 | |
| rs10852344 | 16 | near | C/T | 0.17 | 0.113 | 0.076 |
| rs11668344 | 19 | A/G | 0.42 | 0.588 | 3.9 × 10−20 | |
| rs12461110 | 19 | G/A | 0.16 | 0.330 | 32.4 × 10−7 | |
| rs16991615 | 20 | A/G | 0.95 | 1.170 | 2.7 × 10−17 | |
| GRS-based analysis | ||||||
| GRS | 0.27 | 1.2 × 10−61 | ||||
| wGRS | 1.19 | 2.2 × 10−77 | ||||
ANM, age at natural menopause; GRS, Genetic Risk Score; SNP, single nucleotide polymorphism.
GRS corresponds to the sum of all risk alleles; wGRS corresponds to the weighted sum of all risk alleles, where weights were defined as the beta coefficient of each SNP from Stolk et al.[19] A0/A1 corresponds to the reference and coded allele, where the coded allele is associated later ANM.
Age at natural menopause single nucleotide polymorphisms in relation to primary open-angle glaucoma in the National Eye Institute Glaucoma Human Genetics Collaboration Heritable Overall Operational Database (2,160 cases and 29,111 controls)
| SNP | chr | Gene | A0/A1 | OR | 95% CI | |
| SNP analysis | ||||||
| rs4246511 | 1 | T/C | 1.04 | (0.92,1.12) | 0.42 | |
| rs1635501 | 1 | T/C | 1.02 | (0.92,1.10) | 0.65 | |
| rs2303369 | 2 | C/T | 1.03 | (0.93,1.11) | 0.49 | |
| rs10183486 | 2 | C/T | 0.95 | (0.89,1.07) | 0.24 | |
| rs4693089 | 4 | G/A | 1.01 | (0.92,1.10) | 0.77 | |
| rs890835 | 5 | A/C | 1.06 | (0.89,1.17) | 0.40 | |
| rs365132 | 5 | T/G | 1.01 | (0.92,1.10) | 0.81 | |
| rs2153157 | 6 | A/G | 1.02 | (0.93,1.10) | 0.61 | |
| rs2517388 | 8 | G/T | 1.03 | (0.90,1.14) | 0.66 | |
| rs12294104 | 11 | near | T/C | 0.96 | (0.87,1.11) | 0.50 |
| rs2277339 | 12 | T/G | 1.02 | (0.86,1.18) | 0.80 | |
| rs3736830 | 13 | C/G | 0.99 | (0.88,1.12) | 0.91 | |
| rs4886238 | 13 | A/G | 1.06 | (0.93,1.13) | 0.20 | |
| rs2307449 | 15 | T/G | 0.98 | (0.91,1.09) | 0.65 | |
| rs10852344 | 16 | near | C/T | 1.01 | (0.92,1.10) | 0.80 |
| rs11668344 | 19 | A/G | 1.00 | (0.91,1.10) | 0.99 | |
| rs12461110 | 19 | G/A | 0.98 | (0.90,1.09) | 0.64 | |
| rs16991615 | 20 | A/G | 1.11 | (0.87,1.25) | 0.27 | |
| GRS-based analysis | ||||||
| GRS | 1.013 | (0.990, 1.036) | 0.28 | |||
| wGRS | 1.002 | (0.998, 1.007) | 0.28 | |||
ANM, Age at natural menopause; CI, confidence interval; GRS, Genetic Risk Score; OR, odds ratio; SNP, single nucleotide polymorphism.
GRS corresponds to the sum of all risk alleles. wGRS corresponds to the weighted sum of all risk alleles, where weights were defined as the beta coefficient of each SNP from Stolk et al.[19] A0/A1 corresponds to the reference and coded allele, where the coded allele is associated later ANM.