Literature DB >> 27734858

The evolution of Ebola virus: Insights from the 2013-2016 epidemic.

Edward C Holmes1, Gytis Dudas2,3, Andrew Rambaut3,4,5, Kristian G Andersen6,7,8.   

Abstract

The 2013-2016 epidemic of Ebola virus disease in West Africa was of unprecedented magnitude and changed our perspective on this lethal but sporadically emerging virus. This outbreak also marked the beginning of large-scale real-time molecular epidemiology. Here, we show how evolutionary analyses of Ebola virus genome sequences provided key insights into virus origins, evolution and spread during the epidemic. We provide basic scientists, epidemiologists, medical practitioners and other outbreak responders with an enhanced understanding of the utility and limitations of pathogen genomic sequencing. This will be crucially important in our attempts to track and control future infectious disease outbreaks.

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Year:  2016        PMID： 27734858      PMCID： PMC5580494          DOI： 10.1038/nature19790

Source DB:  PubMed          Journal:  Nature        ISSN： 0028-0836            Impact factor:   49.962


  91 in total

1.  Large-scale sequencing of human influenza reveals the dynamic nature of viral genome evolution.

Authors:  Elodie Ghedin; Naomi A Sengamalay; Martin Shumway; Jennifer Zaborsky; Tamara Feldblyum; Vik Subbu; David J Spiro; Jeff Sitz; Hean Koo; Pavel Bolotov; Dmitry Dernovoy; Tatiana Tatusova; Yiming Bao; Kirsten St George; Jill Taylor; David J Lipman; Claire M Fraser; Jeffery K Taubenberger; Steven L Salzberg
Journal:  Nature       Date:  2005-10-05       Impact factor: 49.962

2.  Erratum for the report "Mutation rate and genotype variation of Ebola virus from Mali case sequences" by T. Hoenen, D. Safronetz, A. Groseth, K. R. Wollenberg, O. A. Koita, B. Diarra, I. S. Fall, F. C. Haidara, F. Diallo, M. Sanogo, Y. S. Sarro, A. Kone, A. C. G. Togo, A. Traore, M. Kodio, A. Dosseh, K. Rosenke, E. de Wit, F. Feldmann, H. Ebihara, V. J. Munster, K. C. Zoon, H. Feldmann, S. Sow.

Authors: 
Journal:  Science       Date:  2015-05-22       Impact factor: 47.728

3.  New Advances in the Effort against Ebola.

Authors:  Erica Ollmann Saphire
Journal:  Cell Host Microbe       Date:  2015-05-13       Impact factor: 21.023

Review 4.  Next-generation sequencing platforms.

Authors:  Elaine R Mardis
Journal:  Annu Rev Anal Chem (Palo Alto Calif)       Date:  2013       Impact factor: 10.745

5.  Fruit bats as reservoirs of Ebola virus.

Authors:  Eric M Leroy; Brice Kumulungui; Xavier Pourrut; Pierre Rouquet; Alexandre Hassanin; Philippe Yaba; André Délicat; Janusz T Paweska; Jean-Paul Gonzalez; Robert Swanepoel
Journal:  Nature       Date:  2005-12-01       Impact factor: 49.962

6.  Persistence and genetic stability of Ebola virus during the outbreak in Kikwit, Democratic Republic of the Congo, 1995.

Authors:  L L Rodriguez; A De Roo; Y Guimard; S G Trappier; A Sanchez; D Bressler; A J Williams; A K Rowe; J Bertolli; A S Khan; T G Ksiazek; C J Peters; S T Nichol
Journal:  J Infect Dis       Date:  1999-02       Impact factor: 5.226

7.  Isolation and phylogenetic characterization of Ebola viruses causing different outbreaks in Gabon.

Authors:  M C Georges-Courbot; A Sanchez; C Y Lu; S Baize; E Leroy; J Lansout-Soukate; C Tévi-Bénissan; A J Georges; S G Trappier; S R Zaki; R Swanepoel; P A Leman; P E Rollin; C J Peters; S T Nichol; T G Ksiazek
Journal:  Emerg Infect Dis       Date:  1997 Jan-Mar       Impact factor: 6.883

8.  Multiple Ebola virus transmission events and rapid decline of central African wildlife.

Authors:  Eric M Leroy; Pierre Rouquet; Pierre Formenty; Sandrine Souquière; Annelisa Kilbourne; Jean-Marc Froment; Magdalena Bermejo; Sheilag Smit; William Karesh; Robert Swanepoel; Sherif R Zaki; Pierre E Rollin
Journal:  Science       Date:  2004-01-16       Impact factor: 47.728

9.  Enhanced methods for unbiased deep sequencing of Lassa and Ebola RNA viruses from clinical and biological samples.

Authors:  Christian B Matranga; Kristian G Andersen; Sarah Winnicki; Michele Busby; Adrianne D Gladden; Ryan Tewhey; Matthew Stremlau; Aaron Berlin; Stephen K Gire; Eleina England; Lina M Moses; Tarjei S Mikkelsen; Ikponmwonsa Odia; Philomena E Ehiane; Onikepe Folarin; Augustine Goba; S Humarr Kahn; Donald S Grant; Anna Honko; Lisa Hensley; Christian Happi; Robert F Garry; Christine M Malboeuf; Bruce W Birren; Andreas Gnirke; Joshua Z Levin; Pardis C Sabeti
Journal:  Genome Biol       Date:  2014       Impact factor: 13.583

10.  Nanopore Sequencing as a Rapidly Deployable Ebola Outbreak Tool.

Authors:  Thomas Hoenen; Allison Groseth; Kyle Rosenke; Robert J Fischer; Andreas Hoenen; Seth D Judson; Cynthia Martellaro; Darryl Falzarano; Andrea Marzi; R Burke Squires; Kurt R Wollenberg; Emmie de Wit; Joseph Prescott; David Safronetz; Neeltje van Doremalen; Trenton Bushmaker; Friederike Feldmann; Kristin McNally; Fatorma K Bolay; Barry Fields; Tara Sealy; Mark Rayfield; Stuart T Nichol; Kathryn C Zoon; Moses Massaquoi; Vincent J Munster; Heinz Feldmann
Journal:  Emerg Infect Dis       Date:  2016-02       Impact factor: 6.883
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  105 in total

Review 1.  Developing therapeutic approaches for twenty-first-century emerging infectious viral diseases.

Authors:  Rita M Meganck; Ralph S Baric
Journal:  Nat Med       Date:  2021-03-15       Impact factor: 53.440

2.  Non-neutralizing Antibodies from a Marburg Infection Survivor Mediate Protection by Fc-Effector Functions and by Enhancing Efficacy of Other Antibodies.

Authors:  Philipp A Ilinykh; Kai Huang; Rodrigo I Santos; Pavlo Gilchuk; Bronwyn M Gunn; Marcus M Karim; Jenny Liang; Mallorie E Fouch; Edgar Davidson; Diptiben V Parekh; James B Kimble; Colette A Pietzsch; Michelle Meyer; Natalia A Kuzmina; Larry Zeitlin; Erica Ollmann Saphire; Galit Alter; James E Crowe; Alexander Bukreyev
Journal:  Cell Host Microbe       Date:  2020-04-21       Impact factor: 21.023

3.  Limited Intrahost Diversity and Background Evolution Accompany 40 Years of Canine Parvovirus Host Adaptation and Spread.

Authors:  Ian E H Voorhees; Hyunwook Lee; Andrew B Allison; Robert Lopez-Astacio; Laura B Goodman; Oyebola O Oyesola; Olutayo Omobowale; Olusegun Fagbohun; Edward J Dubovi; Susan L Hafenstein; Edward C Holmes; Colin R Parrish
Journal:  J Virol       Date:  2019-12-12       Impact factor: 5.103

Review 4.  Evolutionary Virology at 40.

Authors:  Jemma L Geoghegan; Edward C Holmes
Journal:  Genetics       Date:  2018-12       Impact factor: 4.562

Review 5.  High-Definition Medicine.

Authors:  Ali Torkamani; Kristian G Andersen; Steven R Steinhubl; Eric J Topol
Journal:  Cell       Date:  2017-08-24       Impact factor: 41.582

6.  Investigating Outbreaks of Salmonella Typhimurium Using Case-Control Studies, with a Reference to the One Health Approach.

Authors:  Katrin Gaardbo Kuhn; Steen Ethelberg
Journal:  Methods Mol Biol       Date:  2021

7.  Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples.

Authors:  Joshua Quick; Nathan D Grubaugh; Steven T Pullan; Ingra M Claro; Andrew D Smith; Karthik Gangavarapu; Glenn Oliveira; Refugio Robles-Sikisaka; Thomas F Rogers; Nathan A Beutler; Dennis R Burton; Lia Laura Lewis-Ximenez; Jaqueline Goes de Jesus; Marta Giovanetti; Sarah C Hill; Allison Black; Trevor Bedford; Miles W Carroll; Marcio Nunes; Luiz Carlos Alcantara; Ester C Sabino; Sally A Baylis; Nuno R Faria; Matthew Loose; Jared T Simpson; Oliver G Pybus; Kristian G Andersen; Nicholas J Loman
Journal:  Nat Protoc       Date:  2017-05-24       Impact factor: 13.491

8.  Novel Cross-Reactive Monoclonal Antibodies against Ebolavirus Glycoproteins Show Protection in a Murine Challenge Model.

Authors:  James Duehr; Teddy John Wohlbold; Lisa Oestereich; Veronika Chromikova; Fatima Amanat; Madhusudan Rajendran; Sergio Gomez-Medina; Ignacio Mena; Benjamin R tenOever; Adolfo García-Sastre; Christopher F Basler; Cesar Munoz-Fontela; Florian Krammer
Journal:  J Virol       Date:  2017-07-27       Impact factor: 5.103

9.  Analysis of CD8+ T cell response during the 2013-2016 Ebola epidemic in West Africa.

Authors:  Saori Sakabe; Brian M Sullivan; Jessica N Hartnett; Refugio Robles-Sikisaka; Karthik Gangavarapu; Beatrice Cubitt; Brian C Ware; Dylan Kotliar; Luis M Branco; Augustine Goba; Mambu Momoh; John Demby Sandi; Lansana Kanneh; Donald S Grant; Robert F Garry; Kristian G Andersen; Juan Carlos de la Torre; Pardis C Sabeti; John S Schieffelin; Michael B A Oldstone
Journal:  Proc Natl Acad Sci U S A       Date:  2018-07-23       Impact factor: 11.205

10.  Emerging Frontiers in the Study of Molecular Evolution.

Authors:  David A Liberles; Belinda Chang; Kerry Geiler-Samerotte; Aaron Goldman; Jody Hey; Betül Kaçar; Michelle Meyer; William Murphy; David Posada; Andrew Storfer
Journal:  J Mol Evol       Date:  2020-04       Impact factor: 2.395
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