Literature DB >> 32060574

Emerging Frontiers in the Study of Molecular Evolution.

David A Liberles1, Belinda Chang2, Kerry Geiler-Samerotte3, Aaron Goldman4, Jody Hey5, Betül Kaçar6, Michelle Meyer7, William Murphy8, David Posada9, Andrew Storfer10.   

Abstract

A collection of the editors of Journal of Molecular Evolution have gotten together to pose a set of key challenges and future directions for the field of molecular evolution. Topics include challenges and new directions in prebiotic chemistry and the RNA world, reconstruction of early cellular genomes and proteins, macromolecular and functional evolution, evolutionary cell biology, genome evolution, molecular evolutionary ecology, viral phylodynamics, theoretical population genomics, somatic cell molecular evolution, and directed evolution. While our effort is not meant to be exhaustive, it reflects research questions and problems in the field of molecular evolution that are exciting to our editors.

Entities:  

Keywords:  Comparative genomics; Directed evolution; Evolutionary cell biology; Molecular evolutionary ecology; Prebiotic evolution; Somatic evolution

Mesh：

Substances：

Year:  2020        PMID： 32060574      PMCID： PMC7386396          DOI： 10.1007/s00239-020-09932-6

Source DB:  PubMed          Journal:  J Mol Evol        ISSN： 0022-2844            Impact factor:   2.395


  224 in total

Review 1.  The interface of protein structure, protein biophysics, and molecular evolution.

Authors:  David A Liberles; Sarah A Teichmann; Ivet Bahar; Ugo Bastolla; Jesse Bloom; Erich Bornberg-Bauer; Lucy J Colwell; A P Jason de Koning; Nikolay V Dokholyan; Julian Echave; Arne Elofsson; Dietlind L Gerloff; Richard A Goldstein; Johan A Grahnen; Mark T Holder; Clemens Lakner; Nicholas Lartillot; Simon C Lovell; Gavin Naylor; Tina Perica; David D Pollock; Tal Pupko; Lynne Regan; Andrew Roger; Nimrod Rubinstein; Eugene Shakhnovich; Kimmen Sjölander; Shamil Sunyaev; Ashley I Teufel; Jeffrey L Thorne; Joseph W Thornton; Daniel M Weinreich; Simon Whelan
Journal:  Protein Sci       Date:  2012-04-23       Impact factor: 6.725

2.  Bayesian estimation of genomic clines.

Authors:  Zachariah Gompert; C Alex Buerkle
Journal:  Mol Ecol       Date:  2011-03-31       Impact factor: 6.185

Review 3.  Experimental Evolution as a Tool to Investigate Natural Processes and Molecular Functions.

Authors:  Philippe Remigi; Catherine Masson-Boivin; Eduardo P C Rocha
Journal:  Trends Microbiol       Date:  2019-03-23       Impact factor: 17.079

Review 4.  How Single-Cell Genomics Is Changing Evolutionary and Developmental Biology.

Authors:  John C Marioni; Detlev Arendt
Journal:  Annu Rev Cell Dev Biol       Date:  2017-08-16       Impact factor: 13.827

5.  Neutral Theory and the Somatic Evolution of Cancer.

Authors:  Vincent L Cannataro; Jeffrey P Townsend
Journal:  Mol Biol Evol       Date:  2018-06-01       Impact factor: 16.240

Review 6.  The emergence of adaptive laboratory evolution as an efficient tool for biological discovery and industrial biotechnology.

Authors:  Troy E Sandberg; Michael J Salazar; Liam L Weng; Bernhard O Palsson; Adam M Feist
Journal:  Metab Eng       Date:  2019-08-08       Impact factor: 9.783

7.  The evolution and functional repertoire of translation proteins following the origin of life.

Authors:  Aaron D Goldman; Ram Samudrala; John A Baross
Journal:  Biol Direct       Date:  2010-04-08       Impact factor: 4.540

8.  Extremely high genetic diversity in a single tumor points to prevalence of non-Darwinian cell evolution.

Authors:  Shaoping Ling; Zheng Hu; Zuyu Yang; Fang Yang; Yawei Li; Pei Lin; Ke Chen; Lili Dong; Lihua Cao; Yong Tao; Lingtong Hao; Qingjian Chen; Qiang Gong; Dafei Wu; Wenjie Li; Wenming Zhao; Xiuyun Tian; Chunyi Hao; Eric A Hungate; Daniel V T Catenacci; Richard R Hudson; Wen-Hsiung Li; Xuemei Lu; Chung-I Wu
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-11       Impact factor: 11.205

9.  A system for the continuous directed evolution of biomolecules.

Authors:  Kevin M Esvelt; Jacob C Carlson; David R Liu
Journal:  Nature       Date:  2011-04-10       Impact factor: 49.962

10.  Predicting mutational routes to new adaptive phenotypes.

Authors:  Peter A Lind; Eric Libby; Jenny Herzog; Paul B Rainey
Journal:  Elife       Date:  2019-01-08       Impact factor: 8.140
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  4 in total

1.  The Journal of Molecular Evolution Turns 50.

Authors:  Aaron D Goldman; David A Liberles
Journal:  J Mol Evol       Date:  2021-02-23       Impact factor: 2.395

Review 2.  Evolving Perspective on the Origin and Diversification of Cellular Life and the Virosphere.

Authors:  Anja Spang; Tara A Mahendrarajah; Pierre Offre; Courtney W Stairs
Journal:  Genome Biol Evol       Date:  2022-05-31       Impact factor: 4.065

3.  Ancestral Sequence Reconstruction: From Chemical Paleogenetics to Maximum Likelihood Algorithms and Beyond.

Authors:  Avery G A Selberg; Eric A Gaucher; David A Liberles
Journal:  J Mol Evol       Date:  2021-01-24       Impact factor: 2.395

4.  Contrasting population differentiation in two sympatric Triplophysa loaches on the Qinghai-Tibet Plateau.

Authors:  Ling Jin; Zitong Li; Chongnv Wang; Yingnan Wang; Xinxin Li; Jian Yang; Yahui Zhao; Baocheng Guo
Journal:  Front Genet       Date:  2022-08-25       Impact factor: 4.772
  4 in total

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