Literature DB >> 23560931

Next-generation sequencing platforms.

Elaine R Mardis1.   

Abstract

Automated DNA sequencing instruments embody an elegant interplay among chemistry, engineering, software, and molecular biology and have built upon Sanger's founding discovery of dideoxynucleotide sequencing to perform once-unfathomable tasks. Combined with innovative physical mapping approaches that helped to establish long-range relationships between cloned stretches of genomic DNA, fluorescent DNA sequencers produced reference genome sequences for model organisms and for the reference human genome. New types of sequencing instruments that permit amazing acceleration of data-collection rates for DNA sequencing have been developed. The ability to generate genome-scale data sets is now transforming the nature of biological inquiry. Here, I provide an historical perspective of the field, focusing on the fundamental developments that predated the advent of next-generation sequencing instruments and providing information about how these instruments work, their application to biological research, and the newest types of sequencers that can extract data from single DNA molecules.

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Year:  2013        PMID: 23560931     DOI: 10.1146/annurev-anchem-062012-092628

Source DB:  PubMed          Journal:  Annu Rev Anal Chem (Palo Alto Calif)        ISSN: 1936-1327            Impact factor:   10.745


  159 in total

Review 1.  The long tail and rare disease research: the impact of next-generation sequencing for rare Mendelian disorders.

Authors:  Tony Shen; Ariel Lee; Carol Shen; C Jimmy Lin
Journal:  Genet Res (Camb)       Date:  2015-09-14       Impact factor: 1.588

2.  A Revolution in Plant Metabolism: Genome-Enabled Pathway Discovery.

Authors:  Jeongwoon Kim; C Robin Buell
Journal:  Plant Physiol       Date:  2015-07-29       Impact factor: 8.340

3.  Rethinking Mass Spectrometry-Based Small Molecule Identification Strategies in Metabolomics.

Authors:  Fumio Matsuda
Journal:  Mass Spectrom (Tokyo)       Date:  2014-08-16

Review 4.  Molecular methods for somatic mutation testing in lung adenocarcinoma: EGFR and beyond.

Authors:  Christine Khoo; Toni-Maree Rogers; Andrew Fellowes; Anthony Bell; Stephen Fox
Journal:  Transl Lung Cancer Res       Date:  2015-04

5.  Isothermal amplification of long DNA segments by quadruplex priming amplification.

Authors:  Levan Lomidze; Tyler H Williford; Karin Musier-Forsyth; Besik Kankia
Journal:  Anal Methods       Date:  2018-05-29       Impact factor: 2.896

6.  MutantHuntWGS: A Pipeline for Identifying Saccharomyces cerevisiae Mutations.

Authors:  Mitchell A Ellison; Jennifer L Walker; Patrick J Ropp; Jacob D Durrant; Karen M Arndt
Journal:  G3 (Bethesda)       Date:  2020-09-02       Impact factor: 3.154

Review 7.  Detection of structural DNA variation from next generation sequencing data: a review of informatic approaches.

Authors:  Haley J Abel; Eric J Duncavage
Journal:  Cancer Genet       Date:  2013-11-20

Review 8.  Plant exomics: concepts, applications and methodologies in crop improvement.

Authors:  Uzair Hashmi; Samia Shafqat; Faria Khan; Misbah Majid; Harris Hussain; Alvina Gul Kazi; Riffat John; Parvaiz Ahmad
Journal:  Plant Signal Behav       Date:  2015

Review 9.  Somatic mosaicism: implications for disease and transmission genetics.

Authors:  Ian M Campbell; Chad A Shaw; Pawel Stankiewicz; James R Lupski
Journal:  Trends Genet       Date:  2015-04-21       Impact factor: 11.639

Review 10.  Emerging Biosensing Approaches for microRNA Analysis.

Authors:  Richard M Graybill; Ryan C Bailey
Journal:  Anal Chem       Date:  2015-12-21       Impact factor: 6.986

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