Literature DB >> 10430894

Water: foldase activity in catalyzing polypeptide conformational rearrangements.

F Xu1, T A Cross.   

Abstract

Polypeptide conformer interconversion in a low dielectric environment is shown to be highly dependent on water concentration. Water increases this rate by 10(3), apparently by catalyzing hydrogen bond exchange, and thereby presenting functional properties analogous to that of a foldase. This catalytic effect is demonstrated on the interconversion of a parallel gramicidin dimer into an antiparallel dimer. A Hill coefficient of 6.5 is observed, illustrating the highly cooperative nature of the process. Protein folding in nonpolar environs, such as the hydrophobic core of a protein or the hydrophobic domain of a lipid bilayer, may be contingent on and rate-limited by the scarcity of water.

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Year:  1999        PMID: 10430894      PMCID: PMC17731          DOI: 10.1073/pnas.96.16.9057

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  20 in total

1.  Structure of an isolated gramicidin A double helical species by high-resolution nuclear magnetic resonance.

Authors:  S M Pascal; T A Cross
Journal:  J Mol Biol       Date:  1992-08-20       Impact factor: 5.469

Review 2.  Enzymatic catalysis in anhydrous organic solvents.

Authors:  A M Klibanov
Journal:  Trends Biochem Sci       Date:  1989-04       Impact factor: 13.807

3.  Protein hydration in aqueous solution.

Authors:  G Otting; E Liepinsh; K Wüthrich
Journal:  Science       Date:  1991-11-15       Impact factor: 47.728

4.  HPLC study on the 'history' dependence of gramicidin A conformation in phospholipid model membranes.

Authors:  M C Bañó; L Braco; C Abad
Journal:  FEBS Lett       Date:  1989-06-19       Impact factor: 4.124

5.  Spectroscopic studies on the conformation of gramicidin A'. Evidence for a new helical conformation.

Authors:  D W Urry; J D Glickson; D F Mayers; J Haider
Journal:  Biochemistry       Date:  1972-02-15       Impact factor: 3.162

6.  Conformation and molecular mechanisms of carriers and channels.

Authors:  D W Urry; M M Long; M Jacobs; R D Harris
Journal:  Ann N Y Acad Sci       Date:  1975-12-30       Impact factor: 5.691

7.  Water-inserted alpha-helical segments implicate reverse turns as folding intermediates.

Authors:  M Sundaralingam; Y C Sekharudu
Journal:  Science       Date:  1989-06-16       Impact factor: 47.728

8.  Solid phase peptide synthesis of 15N-gramicidins A, B, and C and high performance liquid chromatographic purification.

Authors:  C G Fields; G B Fields; R L Noble; T A Cross
Journal:  Int J Pept Protein Res       Date:  1989-04

9.  Kinetics of gramicidin channel formation in lipid bilayers: transmembrane monomer association.

Authors:  A M O'Connell; R E Koeppe; O S Andersen
Journal:  Science       Date:  1990-11-30       Impact factor: 47.728

10.  Solid-state NMR and hydrogen-deuterium exchange in a bilayer-solubilized peptide: structural and mechanistic implications.

Authors:  M Cotten; R Fu; T A Cross
Journal:  Biophys J       Date:  1999-03       Impact factor: 4.033

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  19 in total

Review 1.  Mass spectrometry of proteins of known mass.

Authors:  A D Miranker
Journal:  Proc Natl Acad Sci U S A       Date:  2000-12-19       Impact factor: 11.205

2.  Structure of the transmembrane region of the M2 protein H(+) channel.

Authors:  J Wang; S Kim; F Kovacs; T A Cross
Journal:  Protein Sci       Date:  2001-11       Impact factor: 6.725

3.  Uniformity, ideality, and hydrogen bonds in transmembrane alpha-helices.

Authors:  Sanguk Kim; Timothy A Cross
Journal:  Biophys J       Date:  2002-10       Impact factor: 4.033

Review 4.  Helical membrane protein conformations and their environment.

Authors:  Timothy A Cross; Dylan T Murray; Anthony Watts
Journal:  Eur Biophys J       Date:  2013-09-01       Impact factor: 1.733

5.  Transmembrane helix uniformity examined by spectral mapping of torsion angles.

Authors:  Richard C Page; Sanguk Kim; Timothy A Cross
Journal:  Structure       Date:  2008-05       Impact factor: 5.006

6.  Application of paramagnetic relaxation enhancements to accelerate the acquisition of 2D and 3D solid-state NMR spectra of oriented membrane proteins.

Authors:  Songlin Wang; T Gopinath; Gianluigi Veglia
Journal:  Methods       Date:  2017-12-22       Impact factor: 3.608

7.  Backbone structure of a small helical integral membrane protein: A unique structural characterization.

Authors:  Richard C Page; Sangwon Lee; Jacob D Moore; Stanley J Opella; Timothy A Cross
Journal:  Protein Sci       Date:  2009-01       Impact factor: 6.725

Review 8.  Influences of membrane mimetic environments on membrane protein structures.

Authors:  Huan-Xiang Zhou; Timothy A Cross
Journal:  Annu Rev Biophys       Date:  2013-03-01       Impact factor: 12.981

9.  Differences in the transactivation domains of p53 family members: a computational study.

Authors:  Jagadeesh N Mavinahalli; Arumugam Madhumalar; Roger W Beuerman; David P Lane; Chandra Verma
Journal:  BMC Genomics       Date:  2010-02-10       Impact factor: 3.969

10.  Structural restraints and heterogeneous orientation of the gramicidin A channel closed state in lipid bilayers.

Authors:  Y Mo; T A Cross; W Nerdal
Journal:  Biophys J       Date:  2004-05       Impact factor: 4.033

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