Literature DB >> 27698418

Genomic insights into the peopling of the Southwest Pacific.

Pontus Skoglund1,2,3, Cosimo Posth4,5, Kendra Sirak6,7, Matthew Spriggs8,9, Frederique Valentin10, Stuart Bedford9,11, Geoffrey R Clark11, Christian Reepmeyer12, Fiona Petchey13, Daniel Fernandes6,14, Qiaomei Fu1,15,16, Eadaoin Harney1,2, Mark Lipson1, Swapan Mallick1,2, Mario Novak6,17, Nadin Rohland1, Kristin Stewardson1,2,18, Syafiq Abdullah19, Murray P Cox20, Françoise R Friedlaender21, Jonathan S Friedlaender22, Toomas Kivisild23,24, George Koki25, Pradiptajati Kusuma26, D Andrew Merriwether27, Francois-X Ricaut28, Joseph T S Wee29, Nick Patterson2, Johannes Krause5, Ron Pinhasi6, David Reich1,2,18.   

Abstract

The appearance of people associated with the Lapita culture in the South Pacific around 3,000 years ago marked the beginning of the last major human dispersal to unpopulated lands. However, the relationship of these pioneers to the long-established Papuan people of the New Guinea region is unclear. Here we present genome-wide ancient DNA data from three individuals from Vanuatu (about 3,100-2,700 years before present) and one from Tonga (about 2,700-2,300 years before present), and analyse them with data from 778 present-day East Asians and Oceanians. Today, indigenous people of the South Pacific harbour a mixture of ancestry from Papuans and a population of East Asian origin that no longer exists in unmixed form, but is a match to the ancient individuals. Most analyses have interpreted the minimum of twenty-five per cent Papuan ancestry in the region today as evidence that the first humans to reach Remote Oceania, including Polynesia, were derived from population mixtures near New Guinea, before their further expansion into Remote Oceania. However, our finding that the ancient individuals had little to no Papuan ancestry implies that later human population movements spread Papuan ancestry through the South Pacific after the first peopling of the islands.

Entities:  

Mesh:

Year:  2016        PMID: 27698418      PMCID: PMC5515717          DOI: 10.1038/nature19844

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  50 in total

1.  Origins and genetic legacy of Neolithic farmers and hunter-gatherers in Europe.

Authors:  Pontus Skoglund; Helena Malmström; Maanasa Raghavan; Jan Storå; Per Hall; Eske Willerslev; M Thomas P Gilbert; Anders Götherström; Mattias Jakobsson
Journal:  Science       Date:  2012-04-27       Impact factor: 47.728

Review 2.  Ancient DNA and the human settlement of the Pacific: a review.

Authors:  Elizabeth Matisoo-Smith
Journal:  J Hum Evol       Date:  2015-01-01       Impact factor: 3.895

3.  A high-coverage genome sequence from an archaic Denisovan individual.

Authors:  Matthias Meyer; Martin Kircher; Marie-Theres Gansauge; Heng Li; Fernando Racimo; Swapan Mallick; Joshua G Schraiber; Flora Jay; Kay Prüfer; Cesare de Filippo; Peter H Sudmant; Can Alkan; Qiaomei Fu; Ron Do; Nadin Rohland; Arti Tandon; Michael Siebauer; Richard E Green; Katarzyna Bryc; Adrian W Briggs; Udo Stenzel; Jesse Dabney; Jay Shendure; Jacob Kitzman; Michael F Hammer; Michael V Shunkov; Anatoli P Derevianko; Nick Patterson; Aida M Andrés; Evan E Eichler; Montgomery Slatkin; David Reich; Janet Kelso; Svante Pääbo
Journal:  Science       Date:  2012-08-30       Impact factor: 47.728

4.  A draft sequence of the Neandertal genome.

Authors:  Johannes Krause; Adrian W Briggs; Tomislav Maricic; Udo Stenzel; Martin Kircher; Nick Patterson; Richard E Green; Heng Li; Weiwei Zhai; Markus Hsi-Yang Fritz; Nancy F Hansen; Eric Y Durand; Anna-Sapfo Malaspinas; Jeffrey D Jensen; Tomas Marques-Bonet; Can Alkan; Kay Prüfer; Matthias Meyer; Hernán A Burbano; Jeffrey M Good; Rigo Schultz; Ayinuer Aximu-Petri; Anne Butthof; Barbara Höber; Barbara Höffner; Madlen Siegemund; Antje Weihmann; Chad Nusbaum; Eric S Lander; Carsten Russ; Nathaniel Novod; Jason Affourtit; Michael Egholm; Christine Verna; Pavao Rudan; Dejana Brajkovic; Željko Kucan; Ivan Gušic; Vladimir B Doronichev; Liubov V Golovanova; Carles Lalueza-Fox; Marco de la Rasilla; Javier Fortea; Antonio Rosas; Ralf W Schmitz; Philip L F Johnson; Evan E Eichler; Daniel Falush; Ewan Birney; James C Mullikin; Montgomery Slatkin; Rasmus Nielsen; Janet Kelso; Michael Lachmann; David Reich; Svante Pääbo
Journal:  Science       Date:  2010-05-07       Impact factor: 47.728

5.  Complete mitochondrial genome sequence of a Middle Pleistocene cave bear reconstructed from ultrashort DNA fragments.

Authors:  Jesse Dabney; Michael Knapp; Isabelle Glocke; Marie-Theres Gansauge; Antje Weihmann; Birgit Nickel; Cristina Valdiosera; Nuria García; Svante Pääbo; Juan-Luis Arsuaga; Matthias Meyer
Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-09       Impact factor: 11.205

6.  The ancestry and affiliations of Kennewick Man.

Authors:  Martin Sikora; Anders Albrechtsen; Thorfinn Sand Korneliussen; J Víctor Moreno-Mayar; Morten Rasmussen; G David Poznik; Christoph P E Zollikofer; Marcia Ponce de León; Morten E Allentoft; Ida Moltke; Hákon Jónsson; Cristina Valdiosera; Ripan S Malhi; Ludovic Orlando; Carlos D Bustamante; Thomas W Stafford; David J Meltzer; Rasmus Nielsen; Eske Willerslev
Journal:  Nature       Date:  2015-07-23       Impact factor: 49.962

7.  Separating endogenous ancient DNA from modern day contamination in a Siberian Neandertal.

Authors:  Pontus Skoglund; Bernd H Northoff; Michael V Shunkov; Anatoli P Derevianko; Svante Pääbo; Johannes Krause; Mattias Jakobsson
Journal:  Proc Natl Acad Sci U S A       Date:  2014-01-27       Impact factor: 11.205

8.  Fast and accurate short read alignment with Burrows-Wheeler transform.

Authors:  Heng Li; Richard Durbin
Journal:  Bioinformatics       Date:  2009-05-18       Impact factor: 6.937

9.  Global diversity, population stratification, and selection of human copy-number variation.

Authors:  Peter H Sudmant; Swapan Mallick; Bradley J Nelson; Fereydoun Hormozdiari; Niklas Krumm; John Huddleston; Bradley P Coe; Carl Baker; Susanne Nordenfelt; Michael Bamshad; Lynn B Jorde; Olga L Posukh; Hovhannes Sahakyan; W Scott Watkins; Levon Yepiskoposyan; M Syafiq Abdullah; Claudio M Bravi; Cristian Capelli; Tor Hervig; Joseph T S Wee; Chris Tyler-Smith; George van Driem; Irene Gallego Romero; Aashish R Jha; Sena Karachanak-Yankova; Draga Toncheva; David Comas; Brenna Henn; Toomas Kivisild; Andres Ruiz-Linares; Antti Sajantila; Ene Metspalu; Jüri Parik; Richard Villems; Elena B Starikovskaya; George Ayodo; Cynthia M Beall; Anna Di Rienzo; Michael F Hammer; Rita Khusainova; Elza Khusnutdinova; William Klitz; Cheryl Winkler; Damian Labuda; Mait Metspalu; Sarah A Tishkoff; Stanislav Dryomov; Rem Sukernik; Nick Patterson; David Reich; Evan E Eichler
Journal:  Science       Date:  2015-08-06       Impact factor: 47.728

10.  The genome of a Late Pleistocene human from a Clovis burial site in western Montana.

Authors:  Morten Rasmussen; Sarah L Anzick; Michael R Waters; Pontus Skoglund; Michael DeGiorgio; Thomas W Stafford; Simon Rasmussen; Ida Moltke; Anders Albrechtsen; Shane M Doyle; G David Poznik; Valborg Gudmundsdottir; Rachita Yadav; Anna-Sapfo Malaspinas; Samuel Stockton White; Morten E Allentoft; Omar E Cornejo; Kristiina Tambets; Anders Eriksson; Peter D Heintzman; Monika Karmin; Thorfinn Sand Korneliussen; David J Meltzer; Tracey L Pierre; Jesper Stenderup; Lauri Saag; Vera M Warmuth; Margarida C Lopes; Ripan S Malhi; Søren Brunak; Thomas Sicheritz-Ponten; Ian Barnes; Matthew Collins; Ludovic Orlando; Francois Balloux; Andrea Manica; Ramneek Gupta; Mait Metspalu; Carlos D Bustamante; Mattias Jakobsson; Rasmus Nielsen; Eske Willerslev
Journal:  Nature       Date:  2014-02-13       Impact factor: 49.962

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  61 in total

Review 1.  Origin of ethnic groups, linguistic families, and civilizations in China viewed from the Y chromosome.

Authors:  Xueer Yu; Hui Li
Journal:  Mol Genet Genomics       Date:  2021-05-26       Impact factor: 3.291

2.  Population genomics: Off the beaten track.

Authors:  Linda Koch
Journal:  Nat Rev Genet       Date:  2016-10-14       Impact factor: 53.242

3.  Archaeology: Of rats and resilience.

Authors:  Jared Diamond
Journal:  Nature       Date:  2017-05-03       Impact factor: 49.962

Review 4.  Origins of modern human ancestry.

Authors:  Anders Bergström; Chris Stringer; Mateja Hajdinjak; Eleanor M L Scerri; Pontus Skoglund
Journal:  Nature       Date:  2021-02-10       Impact factor: 49.962

5.  Mitochondrial DNA variations in Austronesian-speaking populations living in the New Georgia Islands, the Western Province of the Solomon Islands.

Authors:  Mariko Issiki; Izumi Naka; Ryosuke Kimura; Takuro Furusawa; Kazumi Natsuhara; Taro Yamauchi; Minato Nakazawa; Takafumi Ishida; Ryutaro Ohtsuka; Jun Ohashi
Journal:  J Hum Genet       Date:  2017-11-13       Impact factor: 3.172

6.  Ancient human genomes shed new light on East Asia's history.

Authors:  Ewen Callaway
Journal:  Nature       Date:  2020-05-14       Impact factor: 49.962

Review 7.  Tracing the peopling of the world through genomics.

Authors:  Rasmus Nielsen; Joshua M Akey; Mattias Jakobsson; Jonathan K Pritchard; Sarah Tishkoff; Eske Willerslev
Journal:  Nature       Date:  2017-01-18       Impact factor: 49.962

8.  Ancient DNA Evidence from China Reveals the Expansion of Pacific Dogs.

Authors:  Ming Zhang; Guoping Sun; Lele Ren; Haibing Yuan; Guanghui Dong; Lizhao Zhang; Feng Liu; Peng Cao; Albert Min-Shan Ko; Melinda A Yang; Songmei Hu; Guo-Dong Wang; Qiaomei Fu
Journal:  Mol Biol Evol       Date:  2020-05-01       Impact factor: 16.240

9.  Human Migration and the Spread of the Nematode Parasite Wuchereria bancrofti.

Authors:  Scott T Small; Frédéric Labbé; Yaya I Coulibaly; Thomas B Nutman; Christopher L King; David Serre; Peter A Zimmerman
Journal:  Mol Biol Evol       Date:  2019-09-01       Impact factor: 16.240

10.  The evolutionary history of dogs in the Americas.

Authors:  Máire Ní Leathlobhair; Angela R Perri; Evan K Irving-Pease; Kelsey E Witt; Anna Linderholm; James Haile; Ophelie Lebrasseur; Carly Ameen; Jeffrey Blick; Adam R Boyko; Selina Brace; Yahaira Nunes Cortes; Susan J Crockford; Alison Devault; Evangelos A Dimopoulos; Morley Eldridge; Jacob Enk; Shyam Gopalakrishnan; Kevin Gori; Vaughan Grimes; Eric Guiry; Anders J Hansen; Ardern Hulme-Beaman; John Johnson; Andrew Kitchen; Aleksei K Kasparov; Young-Mi Kwon; Pavel A Nikolskiy; Carlos Peraza Lope; Aurélie Manin; Terrance Martin; Michael Meyer; Kelsey Noack Myers; Mark Omura; Jean-Marie Rouillard; Elena Y Pavlova; Paul Sciulli; Mikkel-Holger S Sinding; Andrea Strakova; Varvara V Ivanova; Christopher Widga; Eske Willerslev; Vladimir V Pitulko; Ian Barnes; M Thomas P Gilbert; Keith M Dobney; Ripan S Malhi; Elizabeth P Murchison; Greger Larson; Laurent A F Frantz
Journal:  Science       Date:  2018-07-06       Impact factor: 47.728

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