Literature DB >> 27696937

Transcriptional control by G-quadruplexes: In vivo roles and perspectives for specific intervention.

Pablo Armas1, Aldana David1, Nora B Calcaterra1.   

Abstract

G-quadruplexes are non-canonical DNA secondary structures involved in several genomic and molecular processes. Here, we summarize the main G-quadruplex features and evidences proving the in vivo role on the transcriptional regulation of genes required for zebrafish embryonic development. We also discuss alternative strategies for specifically interfering G-quadruplex in vivo.

Entities:  

Keywords:  antisense; embryonic development; noggin3; oligonucleotide; zebrafish

Mesh：

Substances：

Year:  2016        PMID： 27696937      PMCID： PMC5279714          DOI： 10.1080/21541264.2016.1243505

Source DB:  PubMed          Journal:  Transcription        ISSN： 2154-1272


  29 in total

1.  Dynamic roles for G4 DNA in the biology of eukaryotic cells.

Authors:  Nancy Maizels
Journal:  Nat Struct Mol Biol       Date:  2006-12       Impact factor: 15.369

Review 2.  A hitchhiker's guide to G-quadruplex ligands.

Authors:  David Monchaud; Marie-Paule Teulade-Fichou
Journal:  Org Biomol Chem       Date:  2007-11-14       Impact factor: 3.876

3.  Silencing c-MYC expression by targeting quadruplex in P1 promoter using locked nucleic acid trap.

Authors:  Niti Kumar; Ashok Patowary; Sridhar Sivasubbu; Michael Petersen; Souvik Maiti
Journal:  Biochemistry       Date:  2008-12-16       Impact factor: 3.162

Review 4.  DNA secondary structures: stability and function of G-quadruplex structures.

Authors:  Matthew L Bochman; Katrin Paeschke; Virginia A Zakian
Journal:  Nat Rev Genet       Date:  2012-10-03       Impact factor: 53.242

5.  Evidence of genome-wide G4 DNA-mediated gene expression in human cancer cells.

Authors:  Anjali Verma; Vinod Kumar Yadav; Richa Basundra; Akinchan Kumar; Shantanu Chowdhury
Journal:  Nucleic Acids Res       Date:  2009-02-11       Impact factor: 16.971

6.  How long is too long? Effects of loop size on G-quadruplex stability.

Authors:  Aurore Guédin; Julien Gros; Patrizia Alberti; Jean-Louis Mergny
Journal:  Nucleic Acids Res       Date:  2010-07-26       Impact factor: 16.971

7.  Morphological effects of G-quadruplex stabilization using a small molecule in zebrafish.

Authors:  Tani Agarwal; Mukesh Kumar Lalwani; Santosh Kumar; Saumya Roy; Tushar Kanti Chakraborty; Sridhar Sivasubbu; Souvik Maiti
Journal:  Biochemistry       Date:  2014-02-11       Impact factor: 3.162

Review 8.  Targeting G-quadruplexes in gene promoters: a novel anticancer strategy?

Authors:  Shankar Balasubramanian; Laurence H Hurley; Stephen Neidle
Journal:  Nat Rev Drug Discov       Date:  2011-04       Impact factor: 84.694

9.  Quadruplex-single nucleotide polymorphisms (Quad-SNP) influence gene expression difference among individuals.

Authors:  Aradhita Baral; Pankaj Kumar; Rashi Halder; Prithvi Mani; Vinod Kumar Yadav; Ankita Singh; Swapan K Das; Shantanu Chowdhury
Journal:  Nucleic Acids Res       Date:  2012-01-11       Impact factor: 16.971

10.  G-quadruplexes as novel cis-elements controlling transcription during embryonic development.

Authors:  Aldana P David; Ezequiel Margarit; Pablo Domizi; Claudia Banchio; Pablo Armas; Nora B Calcaterra
Journal:  Nucleic Acids Res       Date:  2016-01-14       Impact factor: 16.971
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  12 in total

1.  G-quadruplex-forming promoter sequences enable transcriptional activation in response to oxidative stress.

Authors:  Bogdan I Fedeles
Journal:  Proc Natl Acad Sci U S A       Date:  2017-03-06       Impact factor: 11.205

2.  Polarizable Molecular Dynamics Simulations of Two c-kit Oncogene Promoter G-Quadruplexes: Effect of Primary and Secondary Structure on Loop and Ion Sampling.

Authors:  Alexa M Salsbury; Tanner J Dean; Justin A Lemkul
Journal:  J Chem Theory Comput       Date:  2020-04-30       Impact factor: 6.006

3.  High-throughput characterization of the role of non-B DNA motifs on promoter function.

Authors:  Ilias Georgakopoulos-Soares; Jesus Victorino; Guillermo E Parada; Vikram Agarwal; Jingjing Zhao; Hei Yuen Wong; Mubarak Ishaq Umar; Orry Elor; Allan Muhwezi; Joon-Yong An; Stephan J Sanders; Chun Kit Kwok; Fumitaka Inoue; Martin Hemberg; Nadav Ahituv
Journal:  Cell Genom       Date:  2022-03-15

4.  G-quadruplexes Stabilization Upregulates CCN1 and Accelerates Aging in Cultured Cerebral Endothelial Cells.

Authors:  Brian Noh; Maria P Blasco-Conesa; Yun-Ju Lai; Bhanu Priya Ganesh; Akihiko Urayama; Ines Moreno-Gonzalez; Sean P Marrelli; Louise D McCullough; Jose Felix Moruno-Manchon
Journal:  Front Aging       Date:  2022-01-12

Review 5.  New Roles for Canonical Transcription Factors in Repeat Expansion Diseases.

Authors:  Lindsey D Goodman; Nancy M Bonini
Journal:  Trends Genet       Date:  2019-12-11       Impact factor: 11.639

6.  Promoter G-quadruplexes and transcription factors cooperate to shape the cell type-specific transcriptome.

Authors:  Sara Lago; Matteo Nadai; Filippo M Cernilogar; Maryam Kazerani; Helena Domíniguez Moreno; Gunnar Schotta; Sara N Richter
Journal:  Nat Commun       Date:  2021-06-23       Impact factor: 14.919

7.  CNBP controls transcription by unfolding DNA G-quadruplex structures.

Authors:  Aldana P David; Angélique Pipier; Federico Pascutti; Andrés Binolfi; Andrea M J Weiner; Emilse Challier; Sofía Heckel; Patrick Calsou; Dennis Gomez; Nora B Calcaterra; Pablo Armas
Journal:  Nucleic Acids Res       Date:  2019-09-05       Impact factor: 16.971

Review 8.  On the epigenetic role of guanosine oxidation.

Authors:  Marco Giorgio; Gaetano Ivan Dellino; Valentina Gambino; Niccolo' Roda; Pier Giuseppe Pelicci
Journal:  Redox Biol       Date:  2019-12-06       Impact factor: 11.799

9.  Spiropyran Meets Guanine Quadruplexes: Isomerization Mechanism and DNA Binding Modes of Quinolizidine-Substituted Spiropyran Probes.

Authors:  Davide Avagliano; Pedro A Sánchez-Murcia; Leticia González
Journal:  Chemistry       Date:  2020-09-17       Impact factor: 5.236

10.  Cation competition and recruitment around the c-kit1 G-quadruplex using polarizable simulations.

Authors:  Alexa M Salsbury; Justin A Lemkul
Journal:  Biophys J       Date:  2021-03-29       Impact factor: 3.699
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