Literature DB >> 23032257

DNA secondary structures: stability and function of G-quadruplex structures.

Matthew L Bochman1, Katrin Paeschke, Virginia A Zakian.   

Abstract

In addition to the canonical double helix, DNA can fold into various other inter- and intramolecular secondary structures. Although many such structures were long thought to be in vitro artefacts, bioinformatics demonstrates that DNA sequences capable of forming these structures are conserved throughout evolution, suggesting the existence of non-B-form DNA in vivo. In addition, genes whose products promote formation or resolution of these structures are found in diverse organisms, and a growing body of work suggests that the resolution of DNA secondary structures is critical for genome integrity. This Review focuses on emerging evidence relating to the characteristics of G-quadruplex structures and the possible influence of such structures on genomic stability and cellular processes, such as transcription.

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Year:  2012        PMID: 23032257      PMCID: PMC3725559          DOI: 10.1038/nrg3296

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  146 in total

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Journal:  Annu Rev Pharmacol Toxicol       Date:  2010       Impact factor: 13.820

8.  A G-rich sequence within the c-kit oncogene promoter forms a parallel G-quadruplex having asymmetric G-tetrad dynamics.

Authors:  Shang-Te Danny Hsu; Peter Varnai; Anthony Bugaut; Anthony P Reszka; Stephen Neidle; Shankar Balasubramanian
Journal:  J Am Chem Soc       Date:  2009-09-23       Impact factor: 15.419

9.  The disruptive positions in human G-quadruplex motifs are less polymorphic and more conserved than their neutral counterparts.

Authors:  Sigve Nakken; Torbjørn Rognes; Eivind Hovig
Journal:  Nucleic Acids Res       Date:  2009-07-17       Impact factor: 16.971

10.  Genome-wide analysis of a G-quadruplex-specific single-chain antibody that regulates gene expression.

Authors:  Himesh Fernando; Sven Sewitz; Jeremy Darot; Simon Tavaré; Julian Leon Huppert; Shankar Balasubramanian
Journal:  Nucleic Acids Res       Date:  2009-09-10       Impact factor: 16.971

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  419 in total

Review 1.  Transposable elements and G-quadruplexes.

Authors:  Eduard Kejnovsky; Viktor Tokan; Matej Lexa
Journal:  Chromosome Res       Date:  2015-09       Impact factor: 5.239

2.  Rif1 binds to G quadruplexes and suppresses replication over long distances.

Authors:  Yutaka Kanoh; Seiji Matsumoto; Rino Fukatsu; Naoko Kakusho; Nobuaki Kono; Claire Renard-Guillet; Koji Masuda; Keisuke Iida; Kazuo Nagasawa; Katsuhiko Shirahige; Hisao Masai
Journal:  Nat Struct Mol Biol       Date:  2015-10-05       Impact factor: 15.369

Review 3.  Unravelling the genomic targets of small molecules using high-throughput sequencing.

Authors:  Raphaël Rodriguez; Kyle M Miller
Journal:  Nat Rev Genet       Date:  2014-10-14       Impact factor: 53.242

Review 4.  Lingering Questions about Enhancer RNA and Enhancer Transcription-Coupled Genomic Instability.

Authors:  Gerson Rothschild; Uttiya Basu
Journal:  Trends Genet       Date:  2017-01-10       Impact factor: 11.639

5.  Human AP-endonuclease (Ape1) activity on telomeric G4 structures is modulated by acetylatable lysine residues in the N-terminal sequence.

Authors:  Silvia Burra; Daniela Marasco; Matilde Clarissa Malfatti; Giulia Antoniali; Antonella Virgilio; Veronica Esposito; Bruce Demple; Aldo Galeone; Gianluca Tell
Journal:  DNA Repair (Amst)       Date:  2018-11-22

6.  Guanine Quadruplex DNA Regulates Gamma Radiation Response of Genome Functions in the Radioresistant Bacterium Deinococcus radiodurans.

Authors:  Shruti Mishra; Reema Chaudhary; Sudhir Singh; Swathi Kota; Hari S Misra
Journal:  J Bacteriol       Date:  2019-08-08       Impact factor: 3.490

7.  Specialization among iron-sulfur cluster helicases to resolve G-quadruplex DNA structures that threaten genomic stability.

Authors:  Sanjay Kumar Bharti; Joshua A Sommers; Fourbears George; Jochen Kuper; Florian Hamon; Kazuo Shin-ya; Marie-Paule Teulade-Fichou; Caroline Kisker; Robert M Brosh
Journal:  J Biol Chem       Date:  2013-08-09       Impact factor: 5.157

8.  Oxidative Modification of the Potential G-Quadruplex Sequence in the PCNA Gene Promoter Can Turn on Transcription.

Authors:  Samuel C J Redstone; Aaron M Fleming; Cynthia J Burrows
Journal:  Chem Res Toxicol       Date:  2019-01-14       Impact factor: 3.739

9.  Two cationic porphyrin isomers showing different multimeric G-quadruplex recognition specificity against monomeric G-quadruplexes.

Authors:  Xiao-Xi Huang; Li-Na Zhu; Bin Wu; Yan-Fang Huo; Na-Na Duan; De-Ming Kong
Journal:  Nucleic Acids Res       Date:  2014-06-17       Impact factor: 16.971

10.  Thermodynamic characterization of human telomere quadruplex unfolding.

Authors:  R Buscaglia; R D Gray; J B Chaires
Journal:  Biopolymers       Date:  2013-12       Impact factor: 2.505

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