Literature DB >> 27665719

Harnessing the power of microbial autotrophy.

Nico J Claassens1, Diana Z Sousa1, Vitor A P Martins Dos Santos2,3, Willem M de Vos1,4, John van der Oost1.   

Abstract

Autotrophic microorganisms convert CO2 into biomass by deriving energy from light or inorganic electron donors. These CO2-fixing microorganisms have a large, but so far only partially realized, potential for the sustainable production of chemicals and biofuels. Productivities have been improved in autotrophic hosts through the introduction of production pathways and the modification of autotrophic systems by genetic engineering. In addition, approaches are emerging in which CO2 fixation pathways and energy-harvesting systems are transplanted into heterotrophic model microorganisms. Alternative promising concepts are hybrid production systems of autotrophs and heterotrophs, and bio-inorganic hybrids of autotrophic microorganisms with electrocatalysts or light-harvesting semiconductor materials. In this Review, we discuss recent advances and bottlenecks for engineering microbial autotrophy and explore novel strategies that will pave the way towards improved microbial autotrophic production platforms.

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Year:  2016        PMID: 27665719     DOI: 10.1038/nrmicro.2016.130

Source DB:  PubMed          Journal:  Nat Rev Microbiol        ISSN: 1740-1526            Impact factor:   60.633


  125 in total

Review 1.  Carboxylases in natural and synthetic microbial pathways.

Authors:  Tobias J Erb
Journal:  Appl Environ Microbiol       Date:  2011-10-14       Impact factor: 4.792

2.  Experimental evidence for growth advantage and metabolic shift stimulated by photophosphorylation of proteorhodopsin expressed in Escherichia coli at anaerobic condition.

Authors:  Ying Wang; Yan Li; Tuan Xu; Zhenyu Shi; Qiong Wu
Journal:  Biotechnol Bioeng       Date:  2015-01-20       Impact factor: 4.530

Review 3.  Electrobiocommodities: powering microbial production of fuels and commodity chemicals from carbon dioxide with electricity.

Authors:  Derek R Lovley; Kelly P Nevin
Journal:  Curr Opin Biotechnol       Date:  2013-03-04       Impact factor: 9.740

4.  Maximizing photosynthetic efficiency and culture productivity in cyanobacteria upon minimizing the phycobilisome light-harvesting antenna size.

Authors:  Henning Kirst; Cinzia Formighieri; Anastasios Melis
Journal:  Biochim Biophys Acta       Date:  2014-07-18

Review 5.  Ecological aspects of the distribution of different autotrophic CO2 fixation pathways.

Authors:  Ivan A Berg
Journal:  Appl Environ Microbiol       Date:  2011-01-07       Impact factor: 4.792

6.  Functional metagenomic selection of ribulose 1, 5-bisphosphate carboxylase/oxygenase from uncultivated bacteria.

Authors:  Vanessa A Varaljay; Sriram Satagopan; Justin A North; Brian Witte; Manuella N Dourado; Karthik Anantharaman; Mark A Arbing; Shelley Hoeft McCann; Ronald S Oremland; Jillian F Banfield; Kelly C Wrighton; F Robert Tabita
Journal:  Environ Microbiol       Date:  2016-01-21       Impact factor: 5.491

7.  2,3 Butanediol production in an obligate photoautotrophic cyanobacterium in dark conditions via diverse sugar consumption.

Authors:  Jordan T McEwen; Masahiro Kanno; Shota Atsumi
Journal:  Metab Eng       Date:  2016-03-12       Impact factor: 9.783

8.  Evolving improved Synechococcus Rubisco functional expression in Escherichia coli.

Authors:  Oliver Mueller-Cajar; Spencer M Whitney
Journal:  Biochem J       Date:  2008-09-01       Impact factor: 3.857

9.  Quantitative analysis of an engineered CO2-fixing Escherichia coli reveals great potential of heterotrophic CO2 fixation.

Authors:  Fuyu Gong; Guoxia Liu; Xiaoyun Zhai; Jie Zhou; Zhen Cai; Yin Li
Journal:  Biotechnol Biofuels       Date:  2015-06-18       Impact factor: 6.040

Review 10.  Pathways and Bioenergetics of Anaerobic Carbon Monoxide Fermentation.

Authors:  Martijn Diender; Alfons J M Stams; Diana Z Sousa
Journal:  Front Microbiol       Date:  2015-11-19       Impact factor: 5.640

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  39 in total

1.  Synthetic biology advances and applications in the biotechnology industry: a perspective.

Authors:  Leonard Katz; Yvonne Y Chen; Ramon Gonzalez; Todd C Peterson; Huimin Zhao; Richard H Baltz
Journal:  J Ind Microbiol Biotechnol       Date:  2018-06-18       Impact factor: 3.346

2.  Insights into the mechanism and regulation of the CbbQO-type Rubisco activase, a MoxR AAA+ ATPase.

Authors:  Yi-Chin Candace Tsai; Fuzhou Ye; Lynette Liew; Di Liu; Shashi Bhushan; Yong-Gui Gao; Oliver Mueller-Cajar
Journal:  Proc Natl Acad Sci U S A       Date:  2019-12-17       Impact factor: 11.205

3.  Engineering the Reductive Glycine Pathway: A Promising Synthetic Metabolism Approach for C1-Assimilation.

Authors:  Nico J Claassens; Ari Satanowski; Viswanada R Bysani; Beau Dronsella; Enrico Orsi; Vittorio Rainaldi; Suzan Yilmaz; Sebastian Wenk; Steffen N Lindner
Journal:  Adv Biochem Eng Biotechnol       Date:  2022       Impact factor: 2.635

4.  Photosynthetic biohybrid coculture for tandem and tunable CO2 and N2 fixation.

Authors:  Stefano Cestellos-Blanco; Rachel R Chan; Yue-Xiao Shen; Ji Min Kim; Tom A Tacken; Rhesa Ledbetter; Sunmoon Yu; Lance C Seefeldt; Peidong Yang
Journal:  Proc Natl Acad Sci U S A       Date:  2022-06-21       Impact factor: 12.779

5.  Functional reconstitution of a bacterial CO2 concentrating mechanism in Escherichia coli.

Authors:  Avi I Flamholz; Eli Dugan; Cecilia Blikstad; Shmuel Gleizer; Roee Ben-Nissan; Shira Amram; Niv Antonovsky; Sumedha Ravishankar; Elad Noor; Arren Bar-Even; Ron Milo; David F Savage
Journal:  Elife       Date:  2020-10-21       Impact factor: 8.140

6.  Inorganic semiconductor biointerfaces.

Authors:  Yuanwen Jiang; Bozhi Tian
Journal:  Nat Rev Mater       Date:  2018-11-22       Impact factor: 66.308

Review 7.  Physiological limitations and opportunities in microbial metabolic engineering.

Authors:  José Montaño López; Lisset Duran; José L Avalos
Journal:  Nat Rev Microbiol       Date:  2021-08-02       Impact factor: 60.633

8.  Absolute Proteome Quantification in the Gas-Fermenting Acetogen Clostridium autoethanogenum.

Authors:  Kaspar Valgepea; Gert Talbo; Nobuaki Takemori; Ayako Takemori; Christina Ludwig; Vishnuvardhan Mahamkali; Alexander P Mueller; Ryan Tappel; Michael Köpke; Séan Dennis Simpson; Lars Keld Nielsen; Esteban Marcellin
Journal:  mSystems       Date:  2022-04-06       Impact factor: 7.324

9.  A warm welcome for alternative CO2 fixation pathways in microbial biotechnology.

Authors:  Nico J Claassens
Journal:  Microb Biotechnol       Date:  2016-11-22       Impact factor: 5.813

10.  Retinal-Based Proton Pumping in the Near Infrared.

Authors:  Srividya Ganapathy; Hanka Venselaar; Que Chen; Huub J M de Groot; Klaas J Hellingwerf; Willem J de Grip
Journal:  J Am Chem Soc       Date:  2017-02-02       Impact factor: 15.419

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