Literature DB >> 22003013

Carboxylases in natural and synthetic microbial pathways.

Tobias J Erb1.   

Abstract

Carboxylases are among the most important enzymes in the biosphere, because they catalyze a key reaction in the global carbon cycle: the fixation of inorganic carbon (CO₂). This minireview discusses the physiological roles of carboxylases in different microbial pathways that range from autotrophy, carbon assimilation, and anaplerosis to biosynthetic and redox-balancing functions. In addition, the current and possible future uses of carboxylation reactions in synthetic biology are discussed. Such uses include the possible transformation of the greenhouse gas carbon dioxide into value-added compounds and the production of novel antibiotics.

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Year:  2011        PMID: 22003013      PMCID: PMC3233076          DOI: 10.1128/AEM.05702-11

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  116 in total

1.  A novel five-subunit-type 2-oxoglutalate:ferredoxin oxidoreductases from Hydrogenobacter thermophilus TK-6.

Authors:  Na-Rae Yun; Masahiro Yamamoto; Hiroyuki Arai; Masaharu Ishii; Yasuo Igarashi
Journal:  Biochem Biophys Res Commun       Date:  2002-03-22       Impact factor: 3.575

2.  CO2-responsive expression and gene organization of three ribulose-1,5-bisphosphate carboxylase/oxygenase enzymes and carboxysomes in Hydrogenovibrio marinus strain MH-110.

Authors:  Yoichi Yoshizawa; Koichi Toyoda; Hiroyuki Arai; Masaharu Ishii; Yasuo Igarashi
Journal:  J Bacteriol       Date:  2004-09       Impact factor: 3.490

3.  Stabilisation of methylene radicals by cob(II)alamin in coenzyme B12 dependent mutases.

Authors:  Wolfgang Buckel; Christoph Kratky; Bernard T Golding
Journal:  Chemistry       Date:  2005-12-23       Impact factor: 5.236

4.  Pyruvate carboxylase is a major bottleneck for glutamate and lysine production by Corynebacterium glutamicum.

Authors:  P G Peters-Wendisch; B Schiel; V F Wendisch; E Katsoulidis; B Möckel; H Sahm; B J Eikmanns
Journal:  J Mol Microbiol Biotechnol       Date:  2001-04

Review 5.  Biotin enzymes.

Authors:  H G Wood; R E Barden
Journal:  Annu Rev Biochem       Date:  1977       Impact factor: 23.643

Review 6.  Ecological aspects of the distribution of different autotrophic CO2 fixation pathways.

Authors:  Ivan A Berg
Journal:  Appl Environ Microbiol       Date:  2011-01-07       Impact factor: 4.792

7.  Computational screening of novel thiamine-catalyzed decarboxylation reactions of 2-keto acids.

Authors:  Rajeev S Assary; Linda J Broadbelt
Journal:  Bioprocess Biosyst Eng       Date:  2011-03       Impact factor: 3.210

8.  Anaerobic transformation of alkanes to fatty acids by a sulfate-reducing bacterium, strain Hxd3.

Authors:  Chi Ming So; Craig D Phelps; L Y Young
Journal:  Appl Environ Microbiol       Date:  2003-07       Impact factor: 4.792

9.  Study of the distribution of autotrophic CO2 fixation cycles in Crenarchaeota.

Authors:  Ivan A Berg; W Hugo Ramos-Vera; Anna Petri; Harald Huber; Georg Fuchs
Journal:  Microbiology       Date:  2009-10-22       Impact factor: 2.777

10.  Ethyl-substituted erythromycin derivatives produced by directed metabolic engineering.

Authors:  D L Stassi; S J Kakavas; K A Reynolds; G Gunawardana; S Swanson; D Zeidner; M Jackson; H Liu; A Buko; L Katz
Journal:  Proc Natl Acad Sci U S A       Date:  1998-06-23       Impact factor: 11.205

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  35 in total

Review 1.  Improving carbon fixation pathways.

Authors:  Daniel C Ducat; Pamela A Silver
Journal:  Curr Opin Chem Biol       Date:  2012-05-29       Impact factor: 8.822

Review 2.  Biochemical and synthetic biology approaches to improve photosynthetic CO2-fixation.

Authors:  Tobias J Erb; Jan Zarzycki
Journal:  Curr Opin Chem Biol       Date:  2016-07-09       Impact factor: 8.822

3.  Ammonia-oxidizing archaea use the most energy-efficient aerobic pathway for CO2 fixation.

Authors:  Martin Könneke; Daniel M Schubert; Philip C Brown; Michael Hügler; Sonja Standfest; Thomas Schwander; Lennart Schada von Borzyskowski; Tobias J Erb; David A Stahl; Ivan A Berg
Journal:  Proc Natl Acad Sci U S A       Date:  2014-05-19       Impact factor: 11.205

Review 4.  Harnessing the power of microbial autotrophy.

Authors:  Nico J Claassens; Diana Z Sousa; Vitor A P Martins Dos Santos; Willem M de Vos; John van der Oost
Journal:  Nat Rev Microbiol       Date:  2016-09-26       Impact factor: 60.633

5.  Biosynthesis Based on One-Carbon Mixotrophy.

Authors:  Yaeseong Hong; An-Ping Zeng
Journal:  Adv Biochem Eng Biotechnol       Date:  2022       Impact factor: 2.635

6.  Dynamics of metabolic activities and gene expression in the Roseobacter clade bacterium Phaeobacter sp. strain MED193 during growth with thiosulfate.

Authors:  Saraladevi Muthusamy; Federico Baltar; José M González; Jarone Pinhassi
Journal:  Appl Environ Microbiol       Date:  2014-08-29       Impact factor: 4.792

7.  Arcobacter peruensis sp. nov., a Chemolithoheterotroph Isolated from Sulfide- and Organic-Rich Coastal Waters off Peru.

Authors:  Cameron M Callbeck; Chris Pelzer; Gaute Lavik; Timothy G Ferdelman; Jon S Graf; Bram Vekeman; Harald Schunck; Sten Littmann; Bernhard M Fuchs; Philipp F Hach; Tim Kalvelage; Ruth A Schmitz; Marcel M M Kuypers
Journal:  Appl Environ Microbiol       Date:  2019-11-27       Impact factor: 4.792

8.  Ancillary contributions of heterologous biotin protein ligase and carbonic anhydrase for CO2 incorporation into 3-hydroxypropionate by metabolically engineered Pyrococcus furiosus.

Authors:  Hong Lian; Benjamin M Zeldes; Gina L Lipscomb; Aaron B Hawkins; Yejun Han; Andrew J Loder; Declan Nishiyama; Michael W W Adams; Robert M Kelly
Journal:  Biotechnol Bioeng       Date:  2016-06-30       Impact factor: 4.530

Review 9.  Extracellular Metabolism Sets the Table for Microbial Cross-Feeding.

Authors:  Ryan K Fritts; Alexandra L McCully; James B McKinlay
Journal:  Microbiol Mol Biol Rev       Date:  2021-01-13       Impact factor: 11.056

10.  Metabolic versatility of the nitrite-oxidizing bacterium Nitrospira marina and its proteomic response to oxygen-limited conditions.

Authors:  Barbara Bayer; Mak A Saito; Matthew R McIlvin; Sebastian Lücker; Dawn M Moran; Thomas S Lankiewicz; Christopher L Dupont; Alyson E Santoro
Journal:  ISME J       Date:  2020-11-23       Impact factor: 10.302

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