Literature DB >> 27660404

Single-Molecule Tracking and Its Application in Biomolecular Binding Detection.

Cong Liu1, Yen-Liang Liu1, Evan P Perillo1, Andrew K Dunn1, Hsin-Chih Yeh1.   

Abstract

In the past two decades significant advances have been made in single-molecule detection, which enables the direct observation of single biomolecules at work in real time and under physiological conditions. In particular, the development of single-molecule tracking (SMT) microscopy allows us to monitor the motion paths of individual biomolecules in living systems, unveiling the localization dynamics and transport modalities of the biomolecules that support the development of life. Beyond the capabilities of traditional camera-based tracking techniques, state-of-the-art SMT microscopies developed in recent years can record fluorescence lifetime while tracking a single molecule in the 3D space. This multiparameter detection capability can open the door to a wide range of investigations at the cellular or tissue level, including identification of molecular interaction hotspots and characterization of association/dissociation kinetics between molecules. In this review, we discuss various SMT techniques developed to date, with an emphasis on our recent development of the next generation 3D tracking system that not only achieves ultrahigh spatiotemporal resolution but also provides sufficient working depth suitable for live animal imaging. We also discuss the challenges that current SMT techniques are facing and the potential strategies to tackle those challenges.

Entities:  

Keywords:  FRET; HILO; PSF engineering; TCSPC; TIRF; fluorescence imaging; fluorescence lifetime; light-sheet microscopy; maximum likelihood estimation; single-molecule tracking

Year:  2016        PMID: 27660404      PMCID: PMC5028128          DOI: 10.1109/JSTQE.2016.2568160

Source DB:  PubMed          Journal:  IEEE J Sel Top Quantum Electron        ISSN: 1077-260X            Impact factor:   4.544


  166 in total

1.  Quantitative high-speed imaging of entire developing embryos with simultaneous multiview light-sheet microscopy.

Authors:  Raju Tomer; Khaled Khairy; Fernando Amat; Philipp J Keller
Journal:  Nat Methods       Date:  2012-06-03       Impact factor: 28.547

2.  Particle image correlation spectroscopy (PICS): retrieving nanometer-scale correlations from high-density single-molecule position data.

Authors:  S Semrau; T Schmidt
Journal:  Biophys J       Date:  2006-11-03       Impact factor: 4.033

Review 3.  Three-dimensional particle tracking via bifocal imaging.

Authors:  Erdal Toprak; Hamza Balci; Benjamin H Blehm; Paul R Selvin
Journal:  Nano Lett       Date:  2007-06-21       Impact factor: 11.189

4.  High-density mapping of single-molecule trajectories with photoactivated localization microscopy.

Authors:  Suliana Manley; Jennifer M Gillette; George H Patterson; Hari Shroff; Harald F Hess; Eric Betzig; Jennifer Lippincott-Schwartz
Journal:  Nat Methods       Date:  2008-01-13       Impact factor: 28.547

5.  Interferometric fluorescent super-resolution microscopy resolves 3D cellular ultrastructure.

Authors:  Gleb Shtengel; James A Galbraith; Catherine G Galbraith; Jennifer Lippincott-Schwartz; Jennifer M Gillette; Suliana Manley; Rachid Sougrat; Clare M Waterman; Pakorn Kanchanawong; Michael W Davidson; Richard D Fetter; Harald F Hess
Journal:  Proc Natl Acad Sci U S A       Date:  2009-02-06       Impact factor: 11.205

6.  Visualization of dynamics of single endogenous mRNA labeled in live mouse.

Authors:  Hye Yoon Park; Hyungsik Lim; Young J Yoon; Antonia Follenzi; Chiso Nwokafor; Melissa Lopez-Jones; Xiuhua Meng; Robert H Singer
Journal:  Science       Date:  2014-01-24       Impact factor: 47.728

Review 7.  Fluorophore localization algorithms for super-resolution microscopy.

Authors:  Alex Small; Shane Stahlheber
Journal:  Nat Methods       Date:  2014-03       Impact factor: 28.547

Review 8.  Single-molecule imaging revealed dynamic GPCR dimerization.

Authors:  Rinshi S Kasai; Akihiro Kusumi
Journal:  Curr Opin Cell Biol       Date:  2013-12-17       Impact factor: 8.382

9.  Going beyond 2D: Following membrane diffusion and topography in the IgE-Fc[Epsilon]RI system using 3-dimensional tracking microscopy.

Authors:  Nathan P Wells; Guillaume A Lessard; Mary E Phipps; Peter M Goodwin; Diane S Lidke; Bridget S Wilson; James H Werner
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2009-02-24

10.  Fast, high-contrast imaging of animal development with scanned light sheet-based structured-illumination microscopy.

Authors:  Philipp J Keller; Annette D Schmidt; Anthony Santella; Khaled Khairy; Zhirong Bao; Joachim Wittbrodt; Ernst H K Stelzer
Journal:  Nat Methods       Date:  2010-07-04       Impact factor: 28.547

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  7 in total

1.  3D single-molecule tracking enables direct hybridization kinetics measurement in solution.

Authors:  Cong Liu; Judy M Obliosca; Yen-Liang Liu; Yu-An Chen; Ning Jiang; Hsin-Chih Yeh
Journal:  Nanoscale       Date:  2017-05-04       Impact factor: 7.790

2.  Segmentation of 3D Trajectories Acquired by TSUNAMI Microscope: An Application to EGFR Trafficking.

Authors:  Yen-Liang Liu; Evan P Perillo; Cong Liu; Peter Yu; Chao-Kai Chou; Mien-Chie Hung; Andrew K Dunn; Hsin-Chih Yeh
Journal:  Biophys J       Date:  2016-11-15       Impact factor: 4.033

3.  Digital Receptor Occupancy Assay in Quantifying On- and Off-Target Binding Affinities of Therapeutic Antibodies.

Authors:  Chao-Kai Chou; Yen-Liang Liu; Yuan-I Chen; Po-Jung Huang; Pei-Hsiang Tsou; Chun-Te Chen; Heng-Huan Lee; Ying-Nai Wang; Jennifer L Hsu; Jin-Fong Lee; Thomas E Yankeelov; Jun Kameoka; Hsin-Chih Yeh; Mien-Chie Hung
Journal:  ACS Sens       Date:  2020-02-19       Impact factor: 7.711

Review 4.  Mechanical regulation of nucleocytoplasmic translocation in mesenchymal stem cells: characterization and methods for investigation.

Authors:  Lucia Boeri; Diego Albani; Manuela Teresa Raimondi; Emanuela Jacchetti
Journal:  Biophys Rev       Date:  2019-10-18

5.  Measuring DNA Hybridization Kinetics in Live Cells Using a Time-Resolved 3D Single-Molecule Tracking Method.

Authors:  Yuan-I Chen; Yin-Jui Chang; Trung Duc Nguyen; Cong Liu; Stephanie Phillion; Yu-An Kuo; Huong T Vu; Angela Liu; Yen-Liang Liu; Soonwoo Hong; Pengyu Ren; Thomas E Yankeelov; Hsin-Chih Yeh
Journal:  J Am Chem Soc       Date:  2019-09-26       Impact factor: 15.419

6.  Recent developments in the characterization of nucleic acid hybridization kinetics.

Authors:  Yuan-I Chen; Manasa P Sripati; Trung Duc Nguyen; Yin-Jui Chang; Yu-An Kuo; Soonwoo Hong; Hsin-Chih Yeh
Journal:  Curr Opin Biomed Eng       Date:  2021-06-12

7.  Revealing atomic-scale molecular diffusion of a plant-transcription factor WRKY domain protein along DNA.

Authors:  Liqiang Dai; Yongping Xu; Zhenwei Du; Xiao-Dong Su; Jin Yu
Journal:  Proc Natl Acad Sci U S A       Date:  2021-06-08       Impact factor: 11.205

  7 in total

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