Literature DB >> 27625437

Selection and estimation for mixed graphical models.

Shizhe Chen1, Daniela M Witten1, Ali Shojaie1.   

Abstract

We consider the problem of estimating the parameters in a pairwise graphical model in which the distribution of each node, conditioned on the others, may have a different exponential family form. We identify restrictions on the parameter space required for the existence of a well-defined joint density, and establish the consistency of the neighbourhood selection approach for graph reconstruction in high dimensions when the true underlying graph is sparse. Motivated by our theoretical results, we investigate the selection of edges between nodes whose conditional distributions take different parametric forms, and show that efficiency can be gained if edge estimates obtained from the regressions of particular nodes are used to reconstruct the graph. These results are illustrated with examples of Gaussian, Bernoulli, Poisson and exponential distributions. Our theoretical findings are corroborated by evidence from simulation studies.

Entities:  

Keywords:  Compatibility; Conditional likelihood; Exponential family; High dimensionality; Model selection consistency; Neighbourhood selection; Pairwise Markov random field

Year:  2014        PMID: 27625437      PMCID: PMC5018402          DOI: 10.1093/biomet/asu051

Source DB:  PubMed          Journal:  Biometrika        ISSN: 0006-3444            Impact factor:   2.445


  7 in total

1.  Sparse inverse covariance estimation with the graphical lasso.

Authors:  Jerome Friedman; Trevor Hastie; Robert Tibshirani
Journal:  Biostatistics       Date:  2007-12-12       Impact factor: 5.899

2.  Robust Gaussian graphical modeling via l1 penalization.

Authors:  Hokeun Sun; Hongzhe Li
Journal:  Biometrics       Date:  2012-09-28       Impact factor: 2.571

3.  Estimation of Sparse Binary Pairwise Markov Networks using Pseudo-likelihoods.

Authors:  Holger Höfling; Robert Tibshirani
Journal:  J Mach Learn Res       Date:  2009-04-01       Impact factor: 3.654

4.  Regularization Paths for Generalized Linear Models via Coordinate Descent.

Authors:  Jerome Friedman; Trevor Hastie; Rob Tibshirani
Journal:  J Stat Softw       Date:  2010       Impact factor: 6.440

5.  Learning the Structure of Mixed Graphical Models.

Authors:  Jason D Lee; Trevor J Hastie
Journal:  J Comput Graph Stat       Date:  2015-01-01       Impact factor: 2.302

6.  Partial Correlation Estimation by Joint Sparse Regression Models.

Authors:  Jie Peng; Pei Wang; Nengfeng Zhou; Ji Zhu
Journal:  J Am Stat Assoc       Date:  2009-06-01       Impact factor: 5.033

7.  Graph Estimation with Joint Additive Models.

Authors:  Arend Voorman; Ali Shojaie; Daniela Witten
Journal:  Biometrika       Date:  2014-03-01       Impact factor: 2.445

  7 in total
  20 in total

1.  Gene Network Reconstruction using Global-Local Shrinkage Priors.

Authors:  Gwenaël G R Leday; Mathisca C M de Gunst; Gino B Kpogbezan; Aad W van der Vaart; Wessel N van Wieringen; Mark A van de Wiel
Journal:  Ann Appl Stat       Date:  2017-03       Impact factor: 2.083

2.  Graph-based sparse linear discriminant analysis for high-dimensional classification.

Authors:  Jianyu Liu; Guan Yu; Yufeng Liu
Journal:  J Multivar Anal       Date:  2018-12-17       Impact factor: 1.473

3.  Replicates in high dimensions, with applications to latent variable graphical models.

Authors:  Kean Ming Tan; Yang Ning; Daniela M Witten; Han Liu
Journal:  Biometrika       Date:  2016-12-08       Impact factor: 2.445

4.  Compositional zero-inflated network estimation for microbiome data.

Authors:  Min Jin Ha; Junghi Kim; Jessica Galloway-Peña; Kim-Anh Do; Christine B Peterson
Journal:  BMC Bioinformatics       Date:  2020-12-28       Impact factor: 3.169

5.  Dietary Intakes of Vegetable Protein, Folate, and Vitamins B-6 and B-12 Are Partially Correlated with Physical Functioning of Dutch Older Adults Using Copula Graphical Models.

Authors:  Pariya Behrouzi; Pol Grootswagers; Paul L C Keizer; Ellen T H C Smeets; Edith J M Feskens; Lisette C P G M de Groot; Fred A van Eeuwijk
Journal:  J Nutr       Date:  2020-03-01       Impact factor: 4.798

6.  On specification tests for composite likelihood inference.

Authors:  Jing Huang; Yang Ning; Nancy Reid; Yong Chen
Journal:  Biometrika       Date:  2020-06-14       Impact factor: 2.445

Review 7.  Gaussian and Mixed Graphical Models as (multi-)omics data analysis tools.

Authors:  Michael Altenbuchinger; Antoine Weihs; John Quackenbush; Hans Jörgen Grabe; Helena U Zacharias
Journal:  Biochim Biophys Acta Gene Regul Mech       Date:  2019-10-19       Impact factor: 4.490

8.  Inferring network structure in non-normal and mixed discrete-continuous genomic data.

Authors:  Anindya Bhadra; Arvind Rao; Veerabhadran Baladandayuthapani
Journal:  Biometrics       Date:  2017-04-24       Impact factor: 2.571

Review 9.  On the nature and use of models in network neuroscience.

Authors:  Danielle S Bassett; Perry Zurn; Joshua I Gold
Journal:  Nat Rev Neurosci       Date:  2018-09       Impact factor: 34.870

10.  GRAPHICAL MODELS FOR ZERO-INFLATED SINGLE CELL GENE EXPRESSION.

Authors:  Andrew McDavid; Raphael Gottardo; Noah Simon; Mathias Drton
Journal:  Ann Appl Stat       Date:  2019-06-17       Impact factor: 2.083

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.