| Literature DB >> 27570681 |
Anil Yaman1, Shreya Chakrabarti1, Anando Sen1, Chunhua Weng1.
Abstract
Knowledge reuse of cancer trial designs may benefit from a temporal understanding of the evolution of the target populations of cancer studies over time. Therefore, we conducted a retrospective analysis of the trends of cancer trial eligibility criteria between 1999 and 2014. The yearly distributions of eligibility concepts for chemicals and drugs, procedures, observations, and medical conditions extracted from free-text eligibility criteria of 32,000 clinical trials for 89 cancer types were analyzed. We identified the concepts that trend upwards or downwards in all or selected cancer types, and the concepts that show anomalous trends for some cancers. Later, concept trends were studied in a disease-specific manner and illustrated for breast cancer. Criteria trends observed in this study are also validated and interpreted using evidence from the existing medical literature. This study contributes a method for concept trend analysis and original knowledge of the trends in cancer clinical trial eligibility criteria.Entities:
Year: 2016 PMID: 27570681 PMCID: PMC5001741
Source DB: PubMed Journal: AMIA Jt Summits Transl Sci Proc
Figure 1.The distribution of the number of newly opened cancer trials every year between the years 1999 and 2014.
The top 5 concepts from each semantic group ranked by the percentage (and the number) of cancer types for which they exhibit upward or downward trend. For example, HIV vaccine exhibits an upward trend in 65 or 73% of the 89 cancer types, while creatinine exhibits a downward trend in 68 or 76% of the 89 cancer types.
| Chemicals & Drugs | |||
|---|---|---|---|
| Upward Trending Concepts | Percentage | Downward Trending Concepts | Percentage |
| HIV Vaccine | 73% (N=65) | Creatinine | 76% (N=68) |
| Cytochrome P450 3A4 | 49% (N=44) | Mitomycins | 61% (N=54) |
| Crotoxin | 46% (N=41) | Nitrosoureas Antineoplastic Alkylating Agents | 45% (N=40) |
| Blood Group Antigen C | 45% (N=40) | Hormone Receptor | 39% (N=35) |
| Cocaine | 45% (N=40) | Antiemetics | 38% (N=34) |
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| |||
| Interventional Procedure | 51% (N=45) | Hormone Therapy | 92% (N=82) |
| Cognitive Therapy | 46% (N=41) | Biological Response Modifier Therapy | 89% (N=79) |
| Contraception Barrier | 43% (N=38) | Combined Modality Therapy | 84% (N=75) |
| Nursing Therapy | 40% (N=36) | Pharmacotherapeutic | 73% (N=65) |
| Hysterectomy | 40% (N=36) | Chemotherapy Regimen | 72% (N=64) |
|
| |||
| History of Present Illness | 65% (N=65) | Performance Status | 82% (N=73) |
| HIV Seropositivity | 64% (N=64) | Pregnancy Test Negative | 81% (N=72) |
| Pregnancy Test | 46% (N=34) | Platelet Count | 79% (N=70) |
| Kidney Function Test | 35% (N=32) | Granulocyte Count | 64% (N=57) |
| Electrocardiography | 35% (N=32) | White blood Count | 50% (N=45) |
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| |||
| Pregnancy | 76% (N=68) | Urologic Diseases | 91% (N=81) |
| HIV Infections | 73% (N=65) | Not Pregnant | 89% (N=79) |
| Adverse Event | 66% (N=59) | HIV Negative | 64% (N=57) |
| Breastfeeding | 63% (N=56) | Skin Carcinoma | 21% (N=18) |
| Heart Problem | 56% (N=50) | Primary Malignant Neoplasm | 21% (N=18) |
Figure 2.The distribution of yearly frequencies of the concepts “Pregnancy” (a) and “Hormone Therapy” (b) over the topmost 15 types of cancers, ranked based on the number of trials they have.
Figure 3.A network that shows shared concepts belonging to the Chemicals and Drugs semantic group with similar trend in behavior between cancer diseases. Each node represents a cancer type; and each edge represents the value of Jaccard distance measure between the two diseases it connects. Only the edges where the Jaccard measure is less than 0.65 are shown.
Figure 4.A network that shows shared concepts belonging to the Procedures semantic group with similar trend between cancer diseases. Each node represents a cancer type; and each edge represents the value of Jaccard distance measure between the two diseases it connects. Only the edges where the Jaccard measure is less than 0.55 are shown.