Literature DB >> 27524615

Kinetics of Spontaneous and EF-G-Accelerated Rotation of Ribosomal Subunits.

Heena Sharma1, Sarah Adio1, Tamara Senyushkina1, Riccardo Belardinelli1, Frank Peske1, Marina V Rodnina2.   

Abstract

Ribosome dynamics play an important role in translation. The rotation of the ribosomal subunits relative to one another is essential for tRNA-mRNA translocation. An important unresolved question is whether subunit rotation limits the rate of translocation. Here, we monitor subunit rotation relative to peptide bond formation and translocation using ensemble kinetics and single-molecule FRET. We observe that spontaneous forward subunit rotation occurs at a rate of 40 s(-1), independent of the rate of preceding peptide bond formation. Elongation factor G (EF-G) accelerates forward subunit rotation to 200 s(-1). tRNA-mRNA movement is much slower (10-40 s(-1)), suggesting that forward subunit rotation does not limit the rate of translocation. The transition back to the non-rotated state of the ribosome kinetically coincides with tRNA-mRNA movement. Thus, large-scale movements of the ribosome are intrinsically rapid and gated by its ligands such as EF-G and tRNA.
Copyright © 2016 The Author(s). Published by Elsevier Inc. All rights reserved.

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Year:  2016        PMID: 27524615     DOI: 10.1016/j.celrep.2016.07.051

Source DB:  PubMed          Journal:  Cell Rep            Impact factor:   9.423


  20 in total

1.  Structural insights into mammalian mitochondrial translation elongation catalyzed by mtEFG1.

Authors:  Eva Kummer; Nenad Ban
Journal:  EMBO J       Date:  2020-06-30       Impact factor: 11.598

2.  Dynamics of ribosomes and release factors during translation termination in E. coli.

Authors:  Sarah Adio; Heena Sharma; Tamara Senyushkina; Prajwal Karki; Cristina Maracci; Ingo Wohlgemuth; Wolf Holtkamp; Frank Peske; Marina V Rodnina
Journal:  Elife       Date:  2018-06-11       Impact factor: 8.140

3.  Spontaneous ribosomal translocation of mRNA and tRNAs into a chimeric hybrid state.

Authors:  Jie Zhou; Laura Lancaster; John Paul Donohue; Harry F Noller
Journal:  Proc Natl Acad Sci U S A       Date:  2019-04-01       Impact factor: 11.205

4.  Molecular machines.

Authors:  Robert Cross; Claudia Veigel
Journal:  Biophys Rev       Date:  2017-08-07

Review 5.  Dynamic basis of fidelity and speed in translation: Coordinated multistep mechanisms of elongation and termination.

Authors:  Arjun Prabhakar; Junhong Choi; Jinfan Wang; Alexey Petrov; Joseph D Puglisi
Journal:  Protein Sci       Date:  2017-05-23       Impact factor: 6.725

Review 6.  New Insights into Ribosome Structure and Function.

Authors:  Amy Jobe; Zheng Liu; Cristina Gutierrez-Vargas; Joachim Frank
Journal:  Cold Spring Harb Perspect Biol       Date:  2019-01-02       Impact factor: 10.005

7.  Co-temporal Force and Fluorescence Measurements Reveal a Ribosomal Gear Shift Mechanism of Translation Regulation by Structured mRNAs.

Authors:  Varsha P Desai; Filipp Frank; Antony Lee; Maurizio Righini; Laura Lancaster; Harry F Noller; Ignacio Tinoco; Carlos Bustamante
Journal:  Mol Cell       Date:  2019-08-27       Impact factor: 17.970

8.  tRNA Fluctuations Observed on Stalled Ribosomes Are Suppressed during Ongoing Protein Synthesis.

Authors:  Ryan M Jamiolkowski; Chunlai Chen; Barry S Cooperman; Yale E Goldman
Journal:  Biophys J       Date:  2017-12-05       Impact factor: 4.033

9.  The ribosome moves: RNA mechanics and translocation.

Authors:  Harry F Noller; Laura Lancaster; Jie Zhou; Srividya Mohan
Journal:  Nat Struct Mol Biol       Date:  2017-12-07       Impact factor: 15.369

10.  Eukaryotic translation elongation factor 2 (eEF2) catalyzes reverse translocation of the eukaryotic ribosome.

Authors:  Denis Susorov; Nikita Zakharov; Ekaterina Shuvalova; Alexander Ivanov; Tatiana Egorova; Alexey Shuvalov; Ivan N Shatsky; Elena Alkalaeva
Journal:  J Biol Chem       Date:  2018-02-16       Impact factor: 5.157

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