Literature DB >> 16352724

Generating highly ordered DNA nanostrand arrays.

Jingjiao Guan1, L James Lee.   

Abstract

Highly ordered arrays of stretched DNA molecules were generated over the millimeter scale by using a modified molecular combing method and soft lithography. Topological micropatterning on polydimethyl siloxane stamps was used to mediate the dynamic assembly of DNA molecules into arranged nonostrand arrays. These arrays consisted of either short nanostrands of several micrometers with fixed length and orientation or long nanostrands up to several hundred micrometers in length. The nanostrand arrays were transferred onto flat solid surfaces by contact printing, allowing for the creation of more complex patterns. This technique has potential applications for the construction of next-generation DNA chips and functional circuits of DNA-based 1D nanostructures.

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Year:  2005        PMID: 16352724      PMCID: PMC1317928          DOI: 10.1073/pnas.0506902102

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  13 in total

1.  Logic gates and computation from assembled nanowire building blocks.

Authors:  Y Huang; X Duan; Y Cui; L J Lauhon; K H Kim; C M Lieber
Journal:  Science       Date:  2001-11-09       Impact factor: 47.728

Review 2.  DNA chips: promising toys have become powerful tools.

Authors:  D Gerhold; T Rushmore; C T Caskey
Journal:  Trends Biochem Sci       Date:  1999-05       Impact factor: 13.807

3.  Dynamic molecular combing: stretching the whole human genome for high-resolution studies.

Authors:  X Michalet; R Ekong; F Fougerousse; S Rousseaux; C Schurra; N Hornigold; M van Slegtenhorst; J Wolfe; S Povey; J S Beckmann; A Bensimon
Journal:  Science       Date:  1997-09-05       Impact factor: 47.728

4.  DNA-templated self-assembly of protein arrays and highly conductive nanowires.

Authors:  Hao Yan; Sung Ha Park; Gleb Finkelstein; John H Reif; Thomas H LaBean
Journal:  Science       Date:  2003-09-26       Impact factor: 47.728

5.  Multistep energy transfer in single molecular photonic wires.

Authors:  Mike Heilemann; Philip Tinnefeld; Gabriel Sanchez Mosteiro; Maria Garcia Parajo; Niek F Van Hulst; Markus Sauer
Journal:  J Am Chem Soc       Date:  2004-06-02       Impact factor: 15.419

Review 6.  DNA-templated nanowire fabrication.

Authors:  Randall M Stoltenberg; Adam T Woolley
Journal:  Biomed Microdevices       Date:  2004-06       Impact factor: 2.838

7.  Nanowires for integrated multicolor nanophotonics.

Authors:  Yu Huang; Xiangfeng Duan; Charles M Lieber
Journal:  Small       Date:  2005-01       Impact factor: 13.281

8.  Fabricating large arrays of microwells with arbitrary dimensions and filling them using discontinuous dewetting.

Authors:  R J Jackman; D C Duffy; E Ostuni; N D Willmore; G M Whitesides
Journal:  Anal Chem       Date:  1998-06-01       Impact factor: 6.986

9.  Polyaniline nanowires on Si surfaces fabricated with DNA templates.

Authors:  Yufeng Ma; Jianming Zhang; Guojin Zhang; Huixin He
Journal:  J Am Chem Soc       Date:  2004-06-09       Impact factor: 15.419

10.  Method for patterning stretched DNA molecules on mica surfaces by soft lithography.

Authors:  M Gad; Shigeru Sugiyama; Toshio Ohtani
Journal:  J Biomol Struct Dyn       Date:  2003-12
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  22 in total

1.  Patterning nanowire and micro-nanoparticle array on micropillar-structured surface: Experiment and modeling.

Authors:  Chung Hsun Lin; Jingjiao Guan; Shiu Wu Chau; Shia Chung Chen; L James Lee
Journal:  Biomicrofluidics       Date:  2010-08-04       Impact factor: 2.800

2.  Functional DNA nanotube arrays: bottom-up meets top-down.

Authors:  Chenxiang Lin; Yonggang Ke; Yan Liu; Michael Mertig; Jian Gu; Hao Yan
Journal:  Angew Chem Int Ed Engl       Date:  2007       Impact factor: 15.336

3.  Elongated unique DNA strand deposition on microstructured substrate by receding meniscus assembly and capillary force.

Authors:  B Charlot; F Bardin; N Sanchez; P Roux; S Teixeira; E Schwob
Journal:  Biomicrofluidics       Date:  2014-01-29       Impact factor: 2.800

4.  Spontaneous formation of aligned DNA nanowires by capillarity-induced skin folding.

Authors:  So Nagashima; Hyun Dong Ha; Do Hyun Kim; Andrej Košmrlj; Howard A Stone; Myoung-Woon Moon
Journal:  Proc Natl Acad Sci U S A       Date:  2017-05-30       Impact factor: 11.205

Review 5.  Beyond gel electrophoresis: microfluidic separations, fluorescence burst analysis, and DNA stretching.

Authors:  Kevin D Dorfman; Scott B King; Daniel W Olson; Joel D P Thomas; Douglas R Tree
Journal:  Chem Rev       Date:  2012-11-12       Impact factor: 60.622

6.  Ordered arrays of native chromatin molecules for high-resolution imaging and analysis.

Authors:  Aline Cerf; Harvey C Tian; Harold G Craighead
Journal:  ACS Nano       Date:  2012-08-01       Impact factor: 15.881

7.  Simulation of single DNA molecule stretching and immobilization in a de-wetting two-phase flow over micropillar-patterned surface.

Authors:  Wei-Ching Liao; Xin Hu; Weixiong Wang; L James Lee
Journal:  Biomicrofluidics       Date:  2013-05-21       Impact factor: 2.800

Review 8.  Flow of DNA in micro/nanofluidics: From fundamentals to applications.

Authors:  Lea Rems; Durgesh Kawale; L James Lee; Pouyan E Boukany
Journal:  Biomicrofluidics       Date:  2016-07-20       Impact factor: 2.800

Review 9.  Evaluating genome-scale approaches to eukaryotic DNA replication.

Authors:  David M Gilbert
Journal:  Nat Rev Genet       Date:  2010-09-01       Impact factor: 53.242

10.  Nanofabricated racks of aligned and anchored DNA substrates for single-molecule imaging.

Authors:  Jason Gorman; Teresa Fazio; Feng Wang; Shalom Wind; Eric C Greene
Journal:  Langmuir       Date:  2010-01-19       Impact factor: 3.882

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