Literature DB >> 27490970

Pred-hERG: A Novel web-Accessible Computational Tool for Predicting Cardiac Toxicity.

Rodolpho C Braga1,2, Vinicius M Alves1, Meryck F B Silva1, Eugene Muratov3, Denis Fourches4, Luciano M Lião2, Alexander Tropsha3, Carolina H Andrade5.   

Abstract

The blockage of the hERG K(+) channels is closely associated with lethal cardiac arrhythmia. The notorious ligand promiscuity of this channel earmarked hERG as one of the most important antitargets to be considered in early stages of drug development process. Herein we report on the development of an innovative and freely accessible web server for early identification of putative hERG blockers and non-blockers in chemical libraries. We have collected the largest publicly available curated hERG dataset of 5,984 compounds. We succeed in developing robust and externally predictive binary (CCR≈0.8) and multiclass models (accuracy≈0.7). These models are available as a web-service freely available for public at http://labmol.farmacia.ufg.br/predherg/. Three following outcomes are available for the users: prediction by binary model, prediction by multi-class model, and the probability maps of atomic contribution. The Pred-hERG will be continuously updated and upgraded as new information became available.
© 2015 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  QSAR models; Screening; hERG; web-Server

Mesh:

Substances:

Year:  2015        PMID: 27490970      PMCID: PMC5720373          DOI: 10.1002/minf.201500040

Source DB:  PubMed          Journal:  Mol Inform        ISSN: 1868-1743            Impact factor:   3.353


  17 in total

Review 1.  Drug discovery applications for KNIME: an open source data mining platform.

Authors:  Michael P Mazanetz; Robert J Marmon; Catherine B T Reisser; Inaki Morao
Journal:  Curr Top Med Chem       Date:  2012       Impact factor: 3.295

2.  Trust, but verify: on the importance of chemical structure curation in cheminformatics and QSAR modeling research.

Authors:  Denis Fourches; Eugene Muratov; Alexander Tropsha
Journal:  J Chem Inf Model       Date:  2010-07-26       Impact factor: 4.956

3.  Improved patch-clamp techniques for high-resolution current recording from cells and cell-free membrane patches.

Authors:  O P Hamill; A Marty; E Neher; B Sakmann; F J Sigworth
Journal:  Pflugers Arch       Date:  1981-08       Impact factor: 3.657

4.  A structural basis for drug-induced long QT syndrome.

Authors:  J S Mitcheson; J Chen; M Lin; C Culberson; M C Sanguinetti
Journal:  Proc Natl Acad Sci U S A       Date:  2000-10-24       Impact factor: 11.205

5.  Tuning HERG out: antitarget QSAR models for drug development.

Authors:  Rodolpho C Braga; Vinicius M Alves; Meryck F B Silva; Eugene Muratov; Denis Fourches; Alexander Tropsha; Carolina H Andrade
Journal:  Curr Top Med Chem       Date:  2014       Impact factor: 3.295

Review 6.  The hERG potassium channel and hERG screening for drug-induced torsades de pointes.

Authors:  Jules C Hancox; Mark J McPate; Aziza El Harchi; Yi Hong Zhang
Journal:  Pharmacol Ther       Date:  2008-06-18       Impact factor: 12.310

7.  JSME: a free molecule editor in JavaScript.

Authors:  Bruno Bienfait; Peter Ertl
Journal:  J Cheminform       Date:  2013-05-21       Impact factor: 5.514

8.  ChEMBL: a large-scale bioactivity database for drug discovery.

Authors:  Anna Gaulton; Louisa J Bellis; A Patricia Bento; Jon Chambers; Mark Davies; Anne Hersey; Yvonne Light; Shaun McGlinchey; David Michalovich; Bissan Al-Lazikani; John P Overington
Journal:  Nucleic Acids Res       Date:  2011-09-23       Impact factor: 16.971

9.  The Chemistry Development Kit (CDK): an open-source Java library for Chemo- and Bioinformatics.

Authors:  Christoph Steinbeck; Yongquan Han; Stefan Kuhn; Oliver Horlacher; Edgar Luttmann; Egon Willighagen
Journal:  J Chem Inf Comput Sci       Date:  2003 Mar-Apr

10.  Similarity maps - a visualization strategy for molecular fingerprints and machine-learning methods.

Authors:  Sereina Riniker; Gregory A Landrum
Journal:  J Cheminform       Date:  2013-09-24       Impact factor: 5.514

View more
  41 in total

1.  Alarms about structural alerts.

Authors:  Vinicius Alves; Eugene Muratov; Stephen Capuzzi; Regina Politi; Yen Low; Rodolpho Braga; Alexey V Zakharov; Alexander Sedykh; Elena Mokshyna; Sherif Farag; Carolina Andrade; Victor Kuz'min; Denis Fourches; Alexander Tropsha
Journal:  Green Chem       Date:  2016-06-28       Impact factor: 10.182

2.  Prediction of hERG Liability - Using SVM Classification, Bootstrapping and Jackknifing.

Authors:  Hongmao Sun; Ruili Huang; Menghang Xia; Sampada Shahane; Noel Southall; Yuhong Wang
Journal:  Mol Inform       Date:  2016-12-21       Impact factor: 3.353

3.  In Vitro, In Silico, and In Vivo Analyses of Novel Aromatic Amidines against Trypanosoma cruzi.

Authors:  Camila C Santos; Jéssica R Lionel; Raiza B Peres; Marcos M Batista; Patrícia B da Silva; Gabriel M de Oliveira; Cristiane F da Silva; Denise G J Batista; Sandra Maria O Souza; Carolina H Andrade; Bruno J Neves; Rodolpho C Braga; Donald A Patrick; Svetlana M Bakunova; Richard R Tidwell; Maria de Nazaré C Soeiro
Journal:  Antimicrob Agents Chemother       Date:  2018-01-25       Impact factor: 5.191

4.  Multi-Descriptor Read Across (MuDRA): A Simple and Transparent Approach for Developing Accurate Quantitative Structure-Activity Relationship Models.

Authors:  Vinicius M Alves; Alexander Golbraikh; Stephen J Capuzzi; Kammy Liu; Wai In Lam; Daniel Robert Korn; Diane Pozefsky; Carolina Horta Andrade; Eugene N Muratov; Alexander Tropsha
Journal:  J Chem Inf Model       Date:  2018-06-13       Impact factor: 4.956

5.  Chemical toxicity prediction for major classes of industrial chemicals: Is it possible to develop universal models covering cosmetics, drugs, and pesticides?

Authors:  Vinicius M Alves; Eugene N Muratov; Alexey Zakharov; Nail N Muratov; Carolina H Andrade; Alexander Tropsha
Journal:  Food Chem Toxicol       Date:  2017-04-12       Impact factor: 6.023

6.  Computational analysis reveal inhibitory action of nimbin against dengue viral envelope protein.

Authors:  P Lavanya; Sudha Ramaiah; Anand Anbarasu
Journal:  Virusdisease       Date:  2015-11-20

Review 7.  Modern approaches to accelerate discovery of new antischistosomal drugs.

Authors:  Bruno Junior Neves; Eugene Muratov; Renato Beilner Machado; Carolina Horta Andrade; Pedro Vitor Lemos Cravo
Journal:  Expert Opin Drug Discov       Date:  2016-05-03       Impact factor: 6.098

8.  Discovery of New Anti-Schistosomal Hits by Integration of QSAR-Based Virtual Screening and High Content Screening.

Authors:  Bruno J Neves; Rafael F Dantas; Mario R Senger; Cleber C Melo-Filho; Walter C G Valente; Ana C M de Almeida; João M Rezende-Neto; Elid F C Lima; Ross Paveley; Nicholas Furnham; Eugene Muratov; Lee Kamentsky; Anne E Carpenter; Rodolpho C Braga; Floriano P Silva-Junior; Carolina Horta Andrade
Journal:  J Med Chem       Date:  2016-07-22       Impact factor: 7.446

Review 9.  Trends in application of advancing computational approaches in GPCR ligand discovery.

Authors:  Siyu Zhu; Meixian Wu; Ziwei Huang; Jing An
Journal:  Exp Biol Med (Maywood)       Date:  2021-02-27

Review 10.  In silico Strategies to Support Fragment-to-Lead Optimization in Drug Discovery.

Authors:  Lauro Ribeiro de Souza Neto; José Teófilo Moreira-Filho; Bruno Junior Neves; Rocío Lucía Beatriz Riveros Maidana; Ana Carolina Ramos Guimarães; Nicholas Furnham; Carolina Horta Andrade; Floriano Paes Silva
Journal:  Front Chem       Date:  2020-02-18       Impact factor: 5.221

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.