Literature DB >> 33641446

Trends in application of advancing computational approaches in GPCR ligand discovery.

Siyu Zhu1,2, Meixian Wu1, Ziwei Huang1,2,3, Jing An1.   

Abstract

G protein-coupled receptors (GPCRs) comprise the most important superfamily of protein targets in current ligand discovery and drug development. GPCRs are integral membrane proteins that play key roles in various cellular signaling processes. Therefore, GPCR signaling pathways are closely associated with numerous diseases, including cancer and several neurological, immunological, and hematological disorders. Computer-aided drug design (CADD) can expedite the process of GPCR drug discovery and potentially reduce the actual cost of research and development. Increasing knowledge of biological structures, as well as improvements on computer power and algorithms, have led to unprecedented use of CADD for the discovery of novel GPCR modulators. Similarly, machine learning approaches are now widely applied in various fields of drug target research. This review briefly summarizes the application of rising CADD methodologies, as well as novel machine learning techniques, in GPCR structural studies and bioligand discovery in the past few years. Recent novel computational strategies and feasible workflows are updated, and representative cases addressing challenging issues on olfactory receptors, biased agonism, and drug-induced cardiotoxic effects are highlighted to provide insights into future GPCR drug discovery.

Entities:  

Keywords:  G protein-coupled receptors; GPCR activation; computer-aided drug design; ligand-based drug design; machine learning; molecular dynamics; structure-based drug design

Mesh:

Substances:

Year:  2021        PMID: 33641446      PMCID: PMC8113737          DOI: 10.1177/1535370221993422

Source DB:  PubMed          Journal:  Exp Biol Med (Maywood)        ISSN: 1535-3699


  120 in total

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Authors:  D E KOSHLAND
Journal:  J Cell Comp Physiol       Date:  1959-12

2.  Structural basis for modulation of a G-protein-coupled receptor by allosteric drugs.

Authors:  Ron O Dror; Hillary F Green; Celine Valant; David W Borhani; James R Valcourt; Albert C Pan; Daniel H Arlow; Meritxell Canals; J Robert Lane; Raphaël Rahmani; Jonathan B Baell; Patrick M Sexton; Arthur Christopoulos; David E Shaw
Journal:  Nature       Date:  2013-10-13       Impact factor: 49.962

Review 3.  Strategies for the discovery of biased GPCR ligands.

Authors:  Marcel Bermudez; Trung Ngoc Nguyen; Christian Omieczynski; Gerhard Wolber
Journal:  Drug Discov Today       Date:  2019-03-01       Impact factor: 7.851

4.  Structure-Guided Screening for Functionally Selective D2 Dopamine Receptor Ligands from a Virtual Chemical Library.

Authors:  Barbara Männel; Mariama Jaiteh; Alexey Zeifman; Alena Randakova; Dorothee Möller; Harald Hübner; Peter Gmeiner; Jens Carlsson
Journal:  ACS Chem Biol       Date:  2017-09-19       Impact factor: 5.100

Review 5.  Impact of GPCR Structures on Drug Discovery.

Authors:  Miles Congreve; Chris de Graaf; Nigel A Swain; Christopher G Tate
Journal:  Cell       Date:  2020-04-02       Impact factor: 41.582

Review 6.  Mechanistic insights into GPCR-G protein interactions.

Authors:  Jacob P Mahoney; Roger K Sunahara
Journal:  Curr Opin Struct Biol       Date:  2016-11-18       Impact factor: 6.809

7.  Structures of the M1 and M2 muscarinic acetylcholine receptor/G-protein complexes.

Authors:  Shoji Maeda; Qianhui Qu; Michael J Robertson; Georgios Skiniotis; Brian K Kobilka
Journal:  Science       Date:  2019-05-10       Impact factor: 47.728

Review 8.  Recent advances in nanodisc technology for membrane protein studies (2012-2017).

Authors:  John E Rouck; John E Krapf; Jahnabi Roy; Hannah C Huff; Aditi Das
Journal:  FEBS Lett       Date:  2017-07-06       Impact factor: 4.124

Review 9.  Discovery of GPCR ligands for probing signal transduction pathways.

Authors:  Simone Brogi; Andrea Tafi; Laurent Désaubry; Canan G Nebigil
Journal:  Front Pharmacol       Date:  2014-11-28       Impact factor: 5.810

10.  SEABED: Small molEcule activity scanner weB servicE baseD.

Authors:  Carlos Fenollosa; Marcel Otón; Pau Andrio; Jorge Cortés; Modesto Orozco; J Ramon Goñi
Journal:  Bioinformatics       Date:  2014-10-27       Impact factor: 6.937

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  2 in total

1.  pdCSM-GPCR: predicting potent GPCR ligands with graph-based signatures.

Authors:  João Paulo L Velloso; David B Ascher; Douglas E V Pires
Journal:  Bioinform Adv       Date:  2021-11-10

Review 2.  Recent Advances in Structure, Function, and Pharmacology of Class A Lipid GPCRs: Opportunities and Challenges for Drug Discovery.

Authors:  R N V Krishna Deepak; Ravi Kumar Verma; Yossa Dwi Hartono; Wen Shan Yew; Hao Fan
Journal:  Pharmaceuticals (Basel)       Date:  2021-12-22
  2 in total

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