Literature DB >> 27474798

mRNA poly(A)-tail changes specified by deadenylation broadly reshape translation in Drosophila oocytes and early embryos.

Stephen W Eichhorn1,2, Alexander O Subtelny1,2,3, Iva Kronja2,4, Jamie C Kwasnieski1,2, Terry L Orr-Weaver2,4, David P Bartel1,2.   

Abstract

Because maturing oocytes and early embryos lack appreciable transcription, posttranscriptional regulatory processes control their development. To better understand this control, we profiled translational efficiencies and poly(A)-tail lengths throughout Drosophila oocyte maturation and early embryonic development. The correspondence between translational-efficiency changes and tail-length changes indicated that tail-length changes broadly regulate translation until gastrulation, when this coupling disappears. During egg activation, relative changes in poly(A)-tail length, and thus translational efficiency, were largely retained in the absence of cytoplasmic polyadenylation, which indicated that selective poly(A)-tail shortening primarily specifies these changes. Many translational changes depended on PAN GU and Smaug, and these changes were largely attributable to tail-length changes. Our results also revealed the presence of tail-length-independent mechanisms that maintained translation despite tail-length shortening during oocyte maturation, and prevented essentially all translation of bicoid and several other mRNAs before egg activation. In addition to these fundamental insights, our results provide valuable resources for future studies.

Entities:  

Keywords:  D. melanogaster; Drosophila embryogenesis; Drosophila oogenesis; PAL-seq; chromosomes; developmental biology; genes; posttranscriptional gene regulation; ribosome footprint profiling; stem cells; wispy

Mesh:

Substances:

Year:  2016        PMID: 27474798      PMCID: PMC4988829          DOI: 10.7554/eLife.16955

Source DB:  PubMed          Journal:  Elife        ISSN: 2050-084X            Impact factor:   8.140


  53 in total

1.  Quantitative proteomics reveals the dynamics of protein changes during Drosophila oocyte maturation and the oocyte-to-embryo transition.

Authors:  Iva Kronja; Zachary J Whitfield; Bingbing Yuan; Kristina Dzeyk; Joanna Kirkpatrick; Jeroen Krijgsveld; Terry L Orr-Weaver
Journal:  Proc Natl Acad Sci U S A       Date:  2014-10-27       Impact factor: 11.205

2.  Smaug recruits the CCR4/POP2/NOT deadenylase complex to trigger maternal transcript localization in the early Drosophila embryo.

Authors:  Jennifer L Semotok; Ramona L Cooperstock; Benjamin D Pinder; Heli K Vari; Howard D Lipshitz; Craig A Smibert
Journal:  Curr Biol       Date:  2005-02-22       Impact factor: 10.834

3.  Coordinate initiation of Drosophila development by regulated polyadenylation of maternal messenger RNAs.

Authors:  F J Sallés; M E Lieberfarb; C Wreden; J P Gergen; S Strickland
Journal:  Science       Date:  1994-12-23       Impact factor: 47.728

4.  An essential cytoplasmic function for the nuclear poly(A) binding protein, PABP2, in poly(A) tail length control and early development in Drosophila.

Authors:  Béatrice Benoit; Géraldine Mitou; Aymeric Chartier; Claudia Temme; Sophie Zaessinger; Elmar Wahle; Isabelle Busseau; Martine Simonelig
Journal:  Dev Cell       Date:  2005-10       Impact factor: 12.270

5.  alpha-Endosulfine is a conserved protein required for oocyte meiotic maturation in Drosophila.

Authors:  Jessica R Von Stetina; Susanne Tranguch; Sudhansu K Dey; Laura A Lee; Byeong Cha; Daniela Drummond-Barbosa
Journal:  Development       Date:  2008-10-16       Impact factor: 6.868

6.  Drosophila Cyclin B3 is required for female fertility and is dispensable for mitosis like Cyclin B.

Authors:  H W Jacobs; J A Knoblich; C F Lehner
Journal:  Genes Dev       Date:  1998-12-01       Impact factor: 11.361

7.  Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling.

Authors:  Nicholas T Ingolia; Sina Ghaemmaghami; John R S Newman; Jonathan S Weissman
Journal:  Science       Date:  2009-02-12       Impact factor: 47.728

8.  PAP- and GLD-2-type poly(A) polymerases are required sequentially in cytoplasmic polyadenylation and oogenesis in Drosophila.

Authors:  Perrine Benoit; Catherine Papin; Jae Eun Kwak; Marvin Wickens; Martine Simonelig
Journal:  Development       Date:  2008-04-23       Impact factor: 6.862

9.  The Drosophila cdc25 homolog twine is required for meiosis.

Authors:  C Courtot; C Fankhauser; V Simanis; C F Lehner
Journal:  Development       Date:  1992-10       Impact factor: 6.868

10.  The zinc-finger protein Zelda is a key activator of the early zygotic genome in Drosophila.

Authors:  Hsiao-Lan Liang; Chung-Yi Nien; Hsiao-Yun Liu; Mark M Metzstein; Nikolai Kirov; Christine Rushlow
Journal:  Nature       Date:  2008-10-19       Impact factor: 49.962

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  64 in total

Review 1.  Tales of Detailed Poly(A) Tails.

Authors:  Angela L Nicholson; Amy E Pasquinelli
Journal:  Trends Cell Biol       Date:  2018-11-29       Impact factor: 20.808

Review 2.  Translational Control during Developmental Transitions.

Authors:  Felipe Karam Teixeira; Ruth Lehmann
Journal:  Cold Spring Harb Perspect Biol       Date:  2019-06-03       Impact factor: 10.005

Review 3.  mRNA Editing, Processing and Quality Control in Caenorhabditis elegans.

Authors:  Joshua A Arribere; Hidehito Kuroyanagi; Heather A Hundley
Journal:  Genetics       Date:  2020-07       Impact factor: 4.562

Review 4.  A tale of non-canonical tails: gene regulation by post-transcriptional RNA tailing.

Authors:  Sha Yu; V Narry Kim
Journal:  Nat Rev Mol Cell Biol       Date:  2020-06-01       Impact factor: 94.444

Review 5.  Acquisition of oocyte competence to develop as an embryo: integrated nuclear and cytoplasmic events.

Authors:  Marco Conti; Federica Franciosi
Journal:  Hum Reprod Update       Date:  2018-05-01       Impact factor: 15.610

Review 6.  Subcellular Specialization and Organelle Behavior in Germ Cells.

Authors:  Yukiko M Yamashita
Journal:  Genetics       Date:  2018-01       Impact factor: 4.562

7.  A Massively Parallel Reporter Assay of 3' UTR Sequences Identifies In Vivo Rules for mRNA Degradation.

Authors:  Michal Rabani; Lindsey Pieper; Guo-Liang Chew; Alexander F Schier
Journal:  Mol Cell       Date:  2017-12-07       Impact factor: 17.970

8.  Calcineurin-dependent Protein Phosphorylation Changes During Egg Activation in Drosophila melanogaster.

Authors:  Zijing Zhang; Yasir H Ahmed-Braimah; Michael L Goldberg; Mariana F Wolfner
Journal:  Mol Cell Proteomics       Date:  2018-11-26       Impact factor: 5.911

9.  Genome-wide maps of ribosomal occupancy provide insights into adaptive evolution and regulatory roles of uORFs during Drosophila development.

Authors:  Hong Zhang; Shengqian Dou; Feng He; Junjie Luo; Liping Wei; Jian Lu
Journal:  PLoS Biol       Date:  2018-07-20       Impact factor: 8.029

10.  Identification of PNG kinase substrates uncovers interactions with the translational repressor TRAL in the oocyte-to-embryo transition.

Authors:  Masatoshi Hara; Sebastian Lourido; Boryana Petrova; Hua Jane Lou; Jessica R Von Stetina; Helena Kashevsky; Benjamin E Turk; Terry L Orr-Weaver
Journal:  Elife       Date:  2018-02-26       Impact factor: 8.140

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